Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,883,858 – 8,883,958 |
Length | 100 |
Max. P | 0.774907 |
Location | 8,883,858 – 8,883,958 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 86.23 |
Mean single sequence MFE | -27.10 |
Consensus MFE | -20.14 |
Energy contribution | -19.82 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.08 |
Mean z-score | -1.91 |
Structure conservation index | 0.74 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.774907 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8883858 100 + 22224390 UCGGCAAUCGUCGAGAAUCGGGUUU-U----------UGUUUCAUAUUCUGUUUUUCAGUUUAUCAGUUUUUCCACUAACAUG----UGGCCCACUUCGUGCUCAAGCACUCAUC (((((....)))))(((..(((...-.----------......(((..(((.....)))..)))........((((......)----))))))..)))((((....))))..... ( -23.30) >DroSec_CAF1 14405 100 + 1 UCGGCAAUCGUCGAGAAUCGGGUUUGU----------UGCUU--UAUUCUGUUUUUCAGUUUAUCAGUUUUUCCACCAACGUGG---UGGCCCACUUCGUGCUCAAGCACUCAUC (((((....)))))(((..(((.....----------.(((.--((..(((.....)))..))..)))....(((((.....))---))))))..)))((((....))))..... ( -26.40) >DroSim_CAF1 14527 103 + 1 UCGGCAAUCGUCGAGAAUCGGGUUUGU----------UGCUU--UAUUCUGUUUUUCAGUUUAUCAGUUUUUCCACCAACGUGGUGGUGGCCCACUUCGUGCUCAAGCACUCAUC (((((....)))))(((..(((((...----------.(((.--((..(((.....)))..))..)))....(((((.....))))).)))))..)))((((....))))..... ( -28.60) >DroEre_CAF1 12977 104 + 1 UCGGCAAUCGCCGAGAAUCGGGUUUUCGC--UUGA---GCUU--UAUUCUGUUUUUCAGUUUAUCAGUUUUUCAGCUAACGUG----UGGCCCACUUCGUGCCGAAGCACUCAUC (((((....)))))(((..(((((..(((--...(---(((.--.(..(((.............)))..)...))))...)))----.)))))..)))((((....))))..... ( -28.82) >DroYak_CAF1 13394 109 + 1 UCGGCAAUUGUCGAGAAGCGGGUUUUUUUUUUUGAUUUGCUU--UAUUCUGCUUUUCAGUUUAUCAGUUUUUCAACCAGCGUG----UGGCCCACUUCGUGCUCAAGCACUCAUC (((((....)))))((((.(((((.......((((...(((.--((..(((.....)))..))..)))...))))........----.))))).))))((((....))))..... ( -28.39) >consensus UCGGCAAUCGUCGAGAAUCGGGUUUGU__________UGCUU__UAUUCUGUUUUUCAGUUUAUCAGUUUUUCCACCAACGUG____UGGCCCACUUCGUGCUCAAGCACUCAUC (((((....)))))(((..(((((....................((..(((.....)))..))...(((........)))........)))))..)))((((....))))..... (-20.14 = -19.82 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:34 2006