Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,051,262 – 1,051,374 |
Length | 112 |
Max. P | 0.548682 |
Location | 1,051,262 – 1,051,374 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.08 |
Mean single sequence MFE | -33.17 |
Consensus MFE | -20.08 |
Energy contribution | -19.67 |
Covariance contribution | -0.41 |
Combinations/Pair | 1.35 |
Mean z-score | -1.70 |
Structure conservation index | 0.61 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548682 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1051262 112 + 22224390 UUGGCAAUCUGCCGGCGGAUGACCUGGAAUUCAUUAAGGAGCUGGACAAGCAGUUCAAACUGCACGGAAACAAGAUCAAGAUCAAGGUGGAGAGGGAUAAUUCCACGA---GUAG----- ..((..(((((....)))))..))(((((((.(((...((((((......))))))...((.((((....)..(((....)))...))).))...))))))))))...---....----- ( -30.50) >DroVir_CAF1 302 117 + 1 UUGGCAAUUUGCCCGCCGAUGAUCUGGAGUUCAUCAAGGAGCUAGACAAACAGUUUAAGCUACACGGCAACAAGAUCAAAAUUAAGGUGGAGCGUGAGAAUACGACCA---GCAGUAACG ..(((.....))).((((((((........)))))..(.((((((((.....)))).)))).)..))).................(.(((..((((....)))).)))---.)....... ( -27.70) >DroGri_CAF1 260 117 + 1 UUGGCAAUUUGCCCGCUGAUGAUCUGGAAUUCAUCAAAGAGCUGGACAAACAGUUCAAGCUGCACGGCAGCAAGAUCAAAAUCAAAGUGGAGCGUGAUAAUUCAACCA---GCAGCAACG ..(((.....))).((((.((((((.............((((((......))))))..(((((...))))).)))))).........(((....(((....))).)))---.)))).... ( -35.40) >DroMoj_CAF1 264 120 + 1 UUGGCAAUUUGCCCGCUGAUGAUCUGGAGUUCAUCAAGGAGCUGGACAAACAGUUCAAGCUGCACGGCAACAAGAUCAAGAUCAAAGUGGAGCGUGAGAAUACGACCACCAGCAGCAGCA ..(((.....))).((((((((........)))))...((((((......))))))..(((((..(....)..(((....)))...((((..((((....)))).))))..)))))))). ( -39.20) >DroAna_CAF1 267 112 + 1 UCGGGAAUCUGCCAGCAGAUGACUUGGAAUUUAUUAAGGAACUGGACAAGCAAUUCAAGUUGCACGGAAACAAAAUCAAGAUCAAGGUGGAGAGGGAUAAUUCCACAU---CCAG----- (((((.(((((....)))))..)))))..............(((((...(((((....)))))..(....)...............((((((........)))))).)---))))----- ( -27.20) >DroPer_CAF1 5143 112 + 1 UUAGCAACCUGCCCGCUGAUGAUCUGGAGUUCAUCAAGGAGCUGGACAAGCAGUUCAAGCUGCAUGGGGACAAGAUCAAGAUCAAGGUGGAGCGGGACAAUUCCACGG---GUAG----- .......((((((((((..((((((.((((((.(((.(.((((((((.....)))).)))).).)))))))....)).)))))).))))).)))))............---....----- ( -39.00) >consensus UUGGCAAUCUGCCCGCUGAUGAUCUGGAAUUCAUCAAGGAGCUGGACAAACAGUUCAAGCUGCACGGCAACAAGAUCAAGAUCAAGGUGGAGCGGGAUAAUUCCACCA___GCAG_____ ..(((.....)))....(((((........)))))...((((((......))))))..(((.((((....)..(((....)))...))).))).((......))................ (-20.08 = -19.67 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:56 2006