Locus 3314

Sequence ID X_DroMel_CAF1
Location 8,859,648 – 8,859,743
Length 95
Max. P 0.547777
window5420

overview

Window 0

Location 8,859,648 – 8,859,743
Length 95
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 79.66
Mean single sequence MFE -38.87
Consensus MFE -26.09
Energy contribution -26.32
Covariance contribution 0.23
Combinations/Pair 1.36
Mean z-score -1.24
Structure conservation index 0.67
SVM decision value 0.03
SVM RNA-class probability 0.547777
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8859648 95 - 22224390
UCCGCUGGCGGAAGGCCGACUUCCGUUGCAUACCGAUUGAGGAGCGGCGAAAGCGUCGCACUCCGCCCGCUCCCGUUGCUCCACUGCCGGC------CACG
...(((((((((((.....)))))................(((((((((..((((..((.....)).))))..)))))))))...))))))------.... ( -43.10)
>DroVir_CAF1 149583 89 - 1
UCCUUUGGCGGAAUGCCGACUUGCGUUGCAUGCCAAUCGAGGAGCGUCGAAAGCGACGCACAGUUCCCGCUGCGGCG------CCUCCAAC------CGCG
((..((((((.(((((......)))))...))))))..))(((((((((..((((((.....))...)))).)))))------.))))...------.... ( -30.80)
>DroPse_CAF1 106271 89 - 1
UCCUUUGGCGAAAUGCCGACUUUCGUUGCAUUCCAAUCGAGGAGCGUCGAAAGCGACGAACUGUACCC---CCCGCUGCACCC---GCAGC------UGCA
((((((((...(((((.(((....)))))))))))...)))))((((((....))))...........---...(((((....---)))))------.)). ( -26.80)
>DroSec_CAF1 99629 95 - 1
UCCGCUGGCGGAAGGCCGACUUCCGUUGCAUACCGAUUGAGGAGCGGCGAAAGCGUCGCACUCCGCCCGCUCCCGUUGCCCCACCGCCGGC------CACG
...((((((((..((.((((.((.((((.....)))).))((((((((....))...((.....)).)))))).)))).))..))))))))------.... ( -41.50)
>DroSim_CAF1 91500 95 - 1
UCCGCUGGCGGAAGGCCGACUUCCGUUGCAUACCGAUUGAGGAGCGGCGAAAGCGUCGCACUCCGCCCGCUCCCGUUGCCCCACCGCCGGC------CACG
...((((((((..((.((((.((.((((.....)))).))((((((((....))...((.....)).)))))).)))).))..))))))))------.... ( -41.50)
>DroYak_CAF1 97394 101 - 1
UCCGCUGGCGGAAGGCCGACUUCCGUUGCAUACCGAUGGAGGAGCGGCGAAAGCGUCGCACUCCCCCCGCUCCCGCCGCCCCUCCGCCGGCUCCCACCACG
...(((((((((.((....(((((((((.....))))))))).((((((..((((..(......)..))))..)))))))).))))))))).......... ( -49.50)
>consensus
UCCGCUGGCGGAAGGCCGACUUCCGUUGCAUACCGAUUGAGGAGCGGCGAAAGCGUCGCACUCCGCCCGCUCCCGCUGCCCCACCGCCGGC______CACG
...((((((((..(((...((((.((((.....)))).)))).((((((....))))))..................)))...)))))))).......... (-26.09 = -26.32 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:11 2006