Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,846,621 – 8,846,734 |
Length | 113 |
Max. P | 0.762027 |
Location | 8,846,621 – 8,846,734 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.71 |
Mean single sequence MFE | -42.65 |
Consensus MFE | -25.48 |
Energy contribution | -25.52 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.45 |
Mean z-score | -1.52 |
Structure conservation index | 0.60 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.762027 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8846621 113 - 22224390 CUAAGGGCAGAUGCGGCGG-------CGAAGGAUAAUCCCCAUUGGUUGGACUUAGCGUGAAGGUUAUGCCACAUGGUGUUGUCGGCUGUGGUGGCAACAAGGUGUUGCCAAAAUGCGGC .............((((((-------((..((.....))((((((((..(((((.......)))))..)))).))))))))))))((((((.(((((((.....)))))))...)))))) ( -38.30) >DroVir_CAF1 133059 119 - 1 CAAUGGGGAAC-GCAUAGGUCGGAAAUGGUGGAUAAUCGCCAUUGGUCGGCGAGAGGGUGAACGUGAUGCCGCAUGGCGUGGUCGGCUGCGGUGGCAGCAGCGUGUUGCCAAAGUGCGGA ..........(-((((..(((((.(((((((......)))))))..))))).....((..(((((..((((((....((..(....)..))))))))...)))).)..))...))))).. ( -45.90) >DroGri_CAF1 96151 119 - 1 CAAUGGGGAAC-GCAUAAUCCGGAAAUGGGGGACAGUCGCCAUUGGUUGGCGACAGUGUGAAGGUGAUGCCACAUGGCGUUGUUGGUUGCGGUGGCAACAGGGUGUUGCCAAAGUGCGGC ..........(-((((...((.......(....).(((((((.....)))))))...(..(.((..(((((....)))))..))..)..)))(((((((.....)))))))..))))).. ( -45.80) >DroWil_CAF1 41213 119 - 1 CGAUGGGAAAU-CCAUGGCUCGGGAAUGGCGGAUAGUCCCCAUUUGUUGGCGAUAAUGUAAAGGUAAUGCUGCACGGUGUUGUUGGCUGUGGUGGUAACAGGGUGUUCCCGAAAUGGGGU ..........(-((((...(((((((((.(.......((((((..((..((((((.(((..((......))..))).))))))..)).)))).))......).))))))))).))))).. ( -38.72) >DroYak_CAF1 84268 113 - 1 CCAAGGGUAGAUGCGGCGG-------UGAUGGAUAAUCGCCAUUGGUGGGACUCAGCGUGAAGGUGAUGCCACAAGGCGUUGCCGGCUGUGGUGGCAACAAGGUGUUCCCAAAAUGGGGC (((...........(((((-------(........)))))).....((((((.((((.....((..(((((....)))))..)).)))).).((....))......)))))...)))... ( -41.00) >DroMoj_CAF1 131150 119 - 1 CAAUGGGAAAC-GCAUAGGUGGGAAAUGGUGGAUAGUCGCCGUUGGUGGGCGACAGCGUGAAGGUGAUGCCACAGGGCGUGGUCGGCUGUGGCGGCAGCAGCGUGUUGCCGAAGUGCGGC ..........(-((((........((((((((....))))))))....(((((((.(((...(.((.(((((((.(.((....)).)))))))).)).).))))))))))...))))).. ( -46.20) >consensus CAAUGGGAAAC_GCAUAGGUCGGAAAUGGUGGAUAAUCGCCAUUGGUUGGCGACAGCGUGAAGGUGAUGCCACAUGGCGUUGUCGGCUGUGGUGGCAACAGGGUGUUGCCAAAAUGCGGC ...............................(((((.((((....((.((((.((.(.....).)).))))))..))))))))).((((((.(((((((.....)))))))...)))))) (-25.48 = -25.52 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:07 2006