Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,832,209 – 8,832,320 |
Length | 111 |
Max. P | 0.828101 |
Location | 8,832,209 – 8,832,320 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 97.30 |
Mean single sequence MFE | -24.38 |
Consensus MFE | -21.78 |
Energy contribution | -21.98 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 0.89 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.828101 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8832209 111 - 22224390 CCAACAAUUAUGCAGGACAGGCAAUAAAUUGCAAAGCAGCGUGUUGCCCACAGAAAAUACAACGCCAGGGAAAUGGCGACGAAAUAAAUGUGAUGCGAUAGUCCAAAACUA ..............((((.(((((((..((((...))))..)))))))((((..........(((((......)))))..........))))........))))....... ( -31.15) >DroSec_CAF1 73099 111 - 1 CCAACAAUUAUGCAGGACAGGCAAUAAAGUGCAAAGCAGCGUGUUCCCCACAGAAAAUACAACGCCAGUGAAAUGGCGACGAAAUAAAUGUGAUGCGAUAGUCCAAAACUA ......(((((((((((((.((.......(((...))))).)))))..((((..........(((((......)))))..........)))).))).)))))......... ( -23.16) >DroSim_CAF1 65340 111 - 1 CCAACAAUUAUGCAGGACAGGCAAUAAAGUGCAAAGCAGCGUGUUCCCCACAGAAAAUACAACGCCAGUGAAAUGGCGACGAAAUAAAUGUGAUGCGAUAGUCCAAAACUA ......(((((((((((((.((.......(((...))))).)))))..((((..........(((((......)))))..........)))).))).)))))......... ( -23.16) >DroEre_CAF1 68743 111 - 1 CCAACAAUUAUGCAGGACAGGCAAUAAAGUGCAAAGCAGCGUGUUCCCCAGAGAAAAUACAACGCCAGGGAAAUGGCAACGAAAUAAAUGUGAUGCGAUAGUCCAAAACUA ..............((((..(((......)))...(((.((((((..(....)..)))))...((((......))))..............).)))....))))....... ( -20.60) >DroYak_CAF1 69570 111 - 1 CCAACAAUUAUGCAGGACAGGCAAUAAAGUGCAAAGCAGCGUGUUCCCCACAGUAAAUACAACGCCAGGGAAAUGGCGACGAAAUAAAUGUGAUGCGAUGGUCCAAAACUA ..............((((..(((......)))....((.(((((....((((..........(((((......)))))..........))))))))).))))))....... ( -23.85) >consensus CCAACAAUUAUGCAGGACAGGCAAUAAAGUGCAAAGCAGCGUGUUCCCCACAGAAAAUACAACGCCAGGGAAAUGGCGACGAAAUAAAUGUGAUGCGAUAGUCCAAAACUA ..............((((..(((......)))...(((.((((((..(....)..)))))..(((((......))))).............).)))....))))....... (-21.78 = -21.98 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:03 2006