Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,813,279 – 8,813,383 |
Length | 104 |
Max. P | 0.554747 |
Location | 8,813,279 – 8,813,383 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 66.51 |
Mean single sequence MFE | -26.38 |
Consensus MFE | -4.10 |
Energy contribution | -7.38 |
Covariance contribution | 3.28 |
Combinations/Pair | 1.10 |
Mean z-score | -2.26 |
Structure conservation index | 0.16 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554747 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8813279 104 + 22224390 AACAUGGAA-------GUGGCAAAAAUAAAAUCCAUGCAAAG--UGAAGAGCAGAGCAUAAAGUGUGUUUAAAGUGUAUUAUGCUUUAA-AGACAUAUCGGUUUUUGCCGCAAA .........-------(((((((((((.......((((...(--(.....))...))))...((((.((((((((((...)))))))))-).))))....)))))))))))... ( -29.40) >DroPse_CAF1 55894 108 + 1 AACAGGUCAACAAAAUGGGUCAAAAGGGGACUCCUUG--GAAGGGUCUGUGCGCUGCUAAAAGU--GUUGGAAAUUUCUAAUAUUUAAA-AAGGAUGACG-ACAUGCCCGACAA .....(((..(((...(((((.......))))).)))--...((((.(((.((((.((..((((--((((((....))))))))))...-.)).).).))-))).))))))).. ( -26.40) >DroSec_CAF1 53201 98 + 1 AACAUGGCA-------GUGGCAAAAACAAAAUCCACG--AAG----UAGAGCCGAGCACAAAGU--GUUUAAAGUGUAUUAUGCUUUAAAAGGGAUAUCG-UCUUUGCCGCAAA .........-------((((((((.((...((((.(.--...----((((((...((((.....--.......)))).....))))))...)))))...)-).))))))))... ( -25.60) >DroSim_CAF1 46751 98 + 1 AACAUGGGA-------GUGGCAAAAACAAAAUCCAUG--AAG----UAGAGCCGAGCACAAAGU--GUUUAAAGUGUAUUAUGCUUUAAAAGGGAUAUCG-UCUUUGCCGCAAA .........-------((((((((.((...((((.((--(((----((..((.((((((...))--))))...))......)))))))....))))...)-).))))))))... ( -25.50) >DroPer_CAF1 53918 108 + 1 AACAGGUCAACAAAAUGGGUCAAAAGGGGACUCCUUG--GUGUGGUCUGUGCUCGGCUAAAAGU--GUUGGAAAUUUCUCAUAUUUAAA-AAGGAUGACG-ACAUGCCCGACAA .((((..((.((....(((((.......))).))...--.))))..)))).............(--(((((..((.((((((.......-....)))).)-).))..)))))). ( -25.00) >consensus AACAUGGCA_______GUGGCAAAAACAAAAUCCAUG__AAG____CAGAGCCGAGCAAAAAGU__GUUUAAAGUGUAUUAUGCUUUAA_AGGGAUAUCG_UCUUUGCCGCAAA ................((((((((......((((................((...))...........(((((((.......)))))))...)))).......))))))))... ( -4.10 = -7.38 + 3.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:56 2006