Locus 3301

Sequence ID X_DroMel_CAF1
Location 8,805,423 – 8,805,539
Length 116
Max. P 0.987973
window5401

overview

Window 1

Location 8,805,423 – 8,805,539
Length 116
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 92.83
Mean single sequence MFE -41.90
Consensus MFE -36.00
Energy contribution -35.88
Covariance contribution -0.12
Combinations/Pair 1.11
Mean z-score -1.98
Structure conservation index 0.86
SVM decision value 2.10
SVM RNA-class probability 0.987973
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8805423 116 - 22224390
UCCAUGCAUCCUUUGAGUGGCUCCUGUGGUCCUGUGUGGGCGCCUUUCUAGGUAUGGCAUUACCAUCACCACAUGCCAUGCCCACAAUGUGCAGCAGUGGG---UGGCUUCCACUCCGA
..............((((.((((((((.(..(..(((((((((((....))))(((((((............))))))))))))))..)..).)))).)))---).))))......... ( -41.40)
>DroSec_CAF1 45552 116 - 1
UCCAUCCAUCCUUUGAGUGGCUCCUGCGGUCCUGUGUGGGCGCCUUUCCAGGUAUGGCAUUACCAUCACCACAUGCCAUGCCCACAAUGUGCAGCAGUGGG---CGGCUUCCUCCCCGA
..............((((.((((((((.(..(..(((((((((((....))))(((((((............))))))))))))))..)..).)))).)))---).))))......... ( -43.80)
>DroSim_CAF1 39088 116 - 1
UCCAUCCAUCCUUUGAGUGGCUCCUGCGGUCCUGUGUGGGCGCCUUUCUAGGUAUGGCAUUACCAUCACCACAUGCCAUGCCCACAAUGUGCAGCAGUGGG---CGGCUUCCUCCCCGA
..............((((.((((((((.(..(..(((((((((((....))))(((((((............))))))))))))))..)..).)))).)))---).))))......... ( -44.50)
>DroEre_CAF1 41921 116 - 1
UCAAUCCAUCCUUUGAGUGGCUCCUGCGGUCCUGUGUGGGCGCCUUUCUAGGUUUGGCAUUACCAUCACCACAUGCCAUACCCACAAUGUGCAGCAGUGGG---UGGCUUCUCACCCGA
..............((((.((((((((.(..(..((((((.((((....)))).((((((............))))))..))))))..)..).)))).)))---).))))......... ( -37.00)
>DroYak_CAF1 43485 118 - 1
UCCAUCCGUCCUUUGAGUGGCUCCUGCGGUCCUGUGUGGGCGCCUUUCUAGGUAUGGCAUUACCAUCACCACAUGCCAUGCCCACAAUGUACAGCAGUGGGCAGUGGCACCAC-CCCGA
..((..((.....))..))((((((((.((....(((((((((((....))))(((((((............))))))))))))))....)).)))).)))).(((....)))-..... ( -42.80)
>consensus
UCCAUCCAUCCUUUGAGUGGCUCCUGCGGUCCUGUGUGGGCGCCUUUCUAGGUAUGGCAUUACCAUCACCACAUGCCAUGCCCACAAUGUGCAGCAGUGGG___UGGCUUCCCCCCCGA
.(((..((.....))..)))(((((((.((....(((((((((((....))))(((((((............))))))))))))))....)).)))).)))...(((........))). (-36.00 = -35.88 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:54 2006