Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,801,484 – 8,801,576 |
Length | 92 |
Max. P | 0.592819 |
Location | 8,801,484 – 8,801,576 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 74.30 |
Mean single sequence MFE | -15.67 |
Consensus MFE | -5.57 |
Energy contribution | -6.07 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.10 |
Structure conservation index | 0.36 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.592819 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8801484 92 + 22224390 ACAGCGUAUAAAAUCUAGAGCAAAAUUAAAGCUCGCAGGCGUUGAAG--AAAGAUGAAUGAAAGUGAAUCCUGUGGGAAAUAGGAAGCAAAAUU .((((((..........((((.........))))....))))))...--...............((..((((((.....))))))..))..... ( -18.24) >DroSec_CAF1 42226 84 + 1 --------AAAAAUCUAGAGCAAAAUUAAAGCUCGUCGGCGUAGAAG--AAAGUUGAAUGAAAGUGAAUCCUGUGGGAAAUAGGAAGCAAGAUU --------...(((((.((((.........)))).(((((.......--...))))).......((..((((((.....))))))..))))))) ( -17.60) >DroSim_CAF1 35246 84 + 1 --------AAAAAUCUGGAGCAAAAUUAAAGCUCGCCGGCGUAGAAG--AAAGAUGAAUGAAAGUGAAUCCUGUGGGAAAUAGGAAGCAAAAUU --------.....((((((((.........))))(....).))))..--...............((..((((((.....))))))..))..... ( -13.40) >DroEre_CAF1 37665 92 + 1 ACUGUGUAAAAAAUCAAAAGCAAAGUUAAAGCUGGCAGACGUAAAAA--AAAGAUAAGUGAAAGUGAAUCCUGUGGGAAAUAGGAAGCAGAAUU .((((..............((..(((....))).))...........--...................((((((.....)))))).)))).... ( -13.20) >DroYak_CAF1 39942 94 + 1 ACUGCGUAAAAAAUCUAAGGCAAAGUUGAAGCUCGCAGGAGUAAAAAAGAAAGAUGAAUGAAAGUGAAUCCUGUGGGAAAUAGGAAGCAAAAUU .(((((........((.......))........)))))..........................((..((((((.....))))))..))..... ( -14.79) >DroAna_CAF1 33505 71 + 1 -----------AUUCUAUUUCAGAAGUGAAGUCCGG----------A--CAGGAUGAAAGUGAGUGGAGCCCGCGGGAAAUAGGAAGCAGAAUU -----------.(((((((((.........((((..----------.--..))))........((((...))))..)))))))))......... ( -16.80) >consensus ________AAAAAUCUAGAGCAAAAUUAAAGCUCGCAGGCGUAGAAA__AAAGAUGAAUGAAAGUGAAUCCUGUGGGAAAUAGGAAGCAAAAUU ................................................................((..((((((.....))))))..))..... ( -5.57 = -6.07 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:53 2006