Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 131,007 – 131,111 |
Length | 104 |
Max. P | 0.999137 |
Location | 131,007 – 131,111 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 90.94 |
Mean single sequence MFE | -42.10 |
Consensus MFE | -37.64 |
Energy contribution | -38.36 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.11 |
Mean z-score | -2.38 |
Structure conservation index | 0.89 |
SVM decision value | 3.39 |
SVM RNA-class probability | 0.999137 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 131007 104 + 22224390 UCUGGGAAGUGUUGCCGGCACUUUGCAGCUGGCCGC------CGCUGGUUGCUGUUAUUGUAGUCACGUUGAGGCCGCUUCCCAAAGUGCUGCUCCCGGCAGAAGUUCCU ...(((((.(.((((((((((((((.(((.((((.(------.((((..(((.......)))..)).)).).)))))))...))))))))......)))))).).))))) ( -42.50) >DroSec_CAF1 3162 104 + 1 UCUGGGAACUGUUGCCGGCACUUUGCAGCUGGCCGC------CGCUGGUUGCUGUUAUUGUAGUCACGUUGAGACCGCUUCCCAAAGUGCUGCUCCCGGCAGAAGUUCCU ...(((((((.(((((((......(((((..((...------.))..))))).......((((.(((.(((.((.....)).))).)))))))..))))))).))))))) ( -44.20) >DroSim_CAF1 2926 104 + 1 UCUGGGAACUGUUGCCGGCACUUUGCAGCUGGCCGC------CGCUGGUUGCUGUUAUUGUAGUCACGUUGAGACCGCUUCCCAAAGUGCUGCUCCCGGCAGAAGUUCCU ...(((((((.(((((((......(((((..((...------.))..))))).......((((.(((.(((.((.....)).))).)))))))..))))))).))))))) ( -44.20) >DroEre_CAF1 2903 110 + 1 UCUGGGAACUGUUGCCGGCACUUUGCAGCUGGCCUCCACCCCCUCCAGUCGCUGUUAUUGUAGUCACGUUGAGACCGCUUCCUAAGGUGCUGCUUCCGGCAGAAGUUCCU ...(((((((.(((((((......((.(((((............))))).)).......((((.(((.(((.((.....)).))).)))))))..))))))).))))))) ( -38.80) >DroYak_CAF1 2979 110 + 1 UCUGGGAACUGUUCCCGGCACUUUGCAGCUGACCUCCUCCCCCGCCGGUCGCUGUUAUUGUAGUCACGUUGAGACCGCUCCCCAACGUGCUGCUCCCGGCAGAAGUUCCU ...(((((((....((((......(((((.((((..(......)..)))))))))....((((.(((((((.(........))))))))))))..))))....))))))) ( -40.80) >consensus UCUGGGAACUGUUGCCGGCACUUUGCAGCUGGCCGC______CGCUGGUUGCUGUUAUUGUAGUCACGUUGAGACCGCUUCCCAAAGUGCUGCUCCCGGCAGAAGUUCCU ...(((((((.(((((((......(((((((((..........))))))))).......((((.(((.(((.((.....)).))).)))))))..))))))).))))))) (-37.64 = -38.36 + 0.72)
Location | 131,007 – 131,111 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 90.94 |
Mean single sequence MFE | -39.88 |
Consensus MFE | -31.50 |
Energy contribution | -32.02 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.06 |
Mean z-score | -2.02 |
Structure conservation index | 0.79 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922866 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 131007 104 - 22224390 AGGAACUUCUGCCGGGAGCAGCACUUUGGGAAGCGGCCUCAACGUGACUACAAUAACAGCAACCAGCG------GCGGCCAGCUGCAAAGUGCCGGCAACACUUCCCAGA .((((....(((((......((((((((...(((((((((...((..........)).((.....)))------).)))).))).)))))))))))))....)))).... ( -33.70) >DroSec_CAF1 3162 104 - 1 AGGAACUUCUGCCGGGAGCAGCACUUUGGGAAGCGGUCUCAACGUGACUACAAUAACAGCAACCAGCG------GCGGCCAGCUGCAAAGUGCCGGCAACAGUUCCCAGA .((((((..((((((..(((((((.((((((.....)))))).))).))................(((------((.....)))))...)).))))))..)))))).... ( -39.90) >DroSim_CAF1 2926 104 - 1 AGGAACUUCUGCCGGGAGCAGCACUUUGGGAAGCGGUCUCAACGUGACUACAAUAACAGCAACCAGCG------GCGGCCAGCUGCAAAGUGCCGGCAACAGUUCCCAGA .((((((..((((((..(((((((.((((((.....)))))).))).))................(((------((.....)))))...)).))))))..)))))).... ( -39.90) >DroEre_CAF1 2903 110 - 1 AGGAACUUCUGCCGGAAGCAGCACCUUAGGAAGCGGUCUCAACGUGACUACAAUAACAGCGACUGGAGGGGGUGGAGGCCAGCUGCAAAGUGCCGGCAACAGUUCCCAGA .((((((..((((((..(((((.((((.((..((((((.......)))).........))..)).)))).(((....))).)))))......))))))..)))))).... ( -41.10) >DroYak_CAF1 2979 110 - 1 AGGAACUUCUGCCGGGAGCAGCACGUUGGGGAGCGGUCUCAACGUGACUACAAUAACAGCGACCGGCGGGGGAGGAGGUCAGCUGCAAAGUGCCGGGAACAGUUCCCAGA .....((((((((((..((((((((((((((.....)))))))))).)).........))..))))))))))....(((..(((....))))))((((.....))))... ( -44.80) >consensus AGGAACUUCUGCCGGGAGCAGCACUUUGGGAAGCGGUCUCAACGUGACUACAAUAACAGCAACCAGCG______GCGGCCAGCUGCAAAGUGCCGGCAACAGUUCCCAGA .((((((..((((((..(((((((.((((((.....)))))).))).)).......((((..((............))...))))....)).))))))..)))))).... (-31.50 = -32.02 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:53 2006