Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,791,137 – 8,791,248 |
Length | 111 |
Max. P | 0.892074 |
Location | 8,791,137 – 8,791,248 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 71.71 |
Mean single sequence MFE | -34.73 |
Consensus MFE | -19.45 |
Energy contribution | -21.39 |
Covariance contribution | 1.94 |
Combinations/Pair | 1.19 |
Mean z-score | -1.88 |
Structure conservation index | 0.56 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.892074 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8791137 111 - 22224390 ACUUUAUAUUUACCUUGAGCCCGGUCGGGA--GUGCCUGGCAACUUUUGGCAACACGGCUGGGGAAUUUGCGUGCCUUGAAAGCGCCACGA-AAAUACCCCAAUUGGU---UAGAGG ............((((.((((.(((((...--.((((.(....)....))))...)))))((((.((((.(((((((....)).).)))).-)))).))))....)))---).)))) ( -37.00) >DroSec_CAF1 39392 91 - 1 ACUUUUUAUUUACCUUGAGACCGGGUGAGA--GUGCCUGGCAACUUUUGGCAACUCGGCUGGGGAA-----------------------GA-AAUAGCCCCAGUUGGGUGGUAGAGG ........((((((....(.((((((....--..)))))))...........((((((((((((.(-----------------------..-..)..)))))))))))))))))).. ( -35.20) >DroSim_CAF1 32366 88 - 1 ACUUUUUAUUUACCUUGAGACCGGGUGAGA--GUGCCUGGCAACUUUUGGCAACUCGGCUGGGGAA-----------------------GA-AAUAGCCCCAGUUGGG---UAGAGG .((((.......((..(((.((((((....--..))))))...)))..))..((((((((((((.(-----------------------..-..)..)))))))))))---))))). ( -33.40) >DroEre_CAF1 35044 110 - 1 ACUUUUUAUUUACCUUAA-GCCGGGAGAGAGUGUGCCUGGCAAU-UUUGGCAACCCAGCUGUGAAGUUUGCAUGCCUUGGAAGCCCCACGAAAGUAGC-CCGGUUGG----UAGAGG ........((((((...(-((((((......((((...(((..(-(..((((..(.((((....)))).)..))))..))..))).)))).......)-))))))))----)))).. ( -33.32) >consensus ACUUUUUAUUUACCUUGAGACCGGGUGAGA__GUGCCUGGCAACUUUUGGCAACUCGGCUGGGGAA_______________________GA_AAUAGCCCCAGUUGGG___UAGAGG .((((.......((..(((.(((((((......)))))))...)))..))...(((((((((((.................................)))))))))))....)))). (-19.45 = -21.39 + 1.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:51 2006