Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,780,784 – 8,780,884 |
Length | 100 |
Max. P | 0.690466 |
Location | 8,780,784 – 8,780,884 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 85.92 |
Mean single sequence MFE | -23.33 |
Consensus MFE | -16.98 |
Energy contribution | -17.23 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 0.73 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690466 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8780784 100 - 22224390 GCACUUUGUCAACUUGGAGUCUUUUAAUUAGAAAAAGUUGCCGCAGGCACCAA---A------CAACCUUGCAACCAUGCCACCUUGCAACCUUACAACCUUGCAAGUU (((....(.((((((....(((.......)))..)))))).)(((((......---.------....))))).....)))...(((((((..........))))))).. ( -19.10) >DroSec_CAF1 29230 91 - 1 GCACUUUGUCAACUUGGAGUCUUUUAAUUAGAAAAAGUUGCCGCAGGCAACAG---A-------AACCUUGCA--------ACCUUGCAACCUUUCAGCCUUGCAAGUU ..((((.(.((((((....(((.......)))..)))))).)((((((....(---(-------((..(((((--------....)))))..)))).))).))))))). ( -21.50) >DroSim_CAF1 27014 91 - 1 GCACUUUGUCAACUUGGAGUCUUUUAAUUAGAAAAAGUUGCCGCAGGCACCAG---C-------AACCUUGCA--------ACCUUGCAACCUUACAGCCUUGCAAGUU ((.((.((.((((((....(((.......)))..)))))).)).)))).....---.-------...((((((--------(..(((........)))..))))))).. ( -19.80) >DroYak_CAF1 26053 109 - 1 GCACUUUGUCAACUUGGAGUCUUUUAAUUAGAAAAAGUUGCCGCAGGCAACAGCAGCAACUUGCAACCUUGCAACCUUGCCACCUUGCAACCUUGCAACCGUGCAAGUU ((.....(.((((((....(((.......)))..)))))).)((.(....).)).))((((((((...((((((..((((......))))..))))))...)))))))) ( -32.90) >consensus GCACUUUGUCAACUUGGAGUCUUUUAAUUAGAAAAAGUUGCCGCAGGCAACAG___A_______AACCUUGCA________ACCUUGCAACCUUACAACCUUGCAAGUU ((.((.((.((((((....(((.......)))..)))))).)).))))...................................(((((((..........))))))).. (-16.98 = -17.23 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:50 2006