Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,768,549 – 8,768,669 |
Length | 120 |
Max. P | 0.531010 |
Location | 8,768,549 – 8,768,669 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.83 |
Mean single sequence MFE | -42.50 |
Consensus MFE | -33.04 |
Energy contribution | -32.72 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.20 |
Mean z-score | -1.44 |
Structure conservation index | 0.78 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.531010 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8768549 120 + 22224390 UCCAAGCUAUAAUCGGAUCCAUUGAGGCGGCACUGCUGGAUGCACUUCUCUAGGCGAUUCUCAAAAUCGGAUAUACCCUGCUGUACGAAGCAGCGUGAUCGGGUCAAACGGAUUUGGCAG .....((((.((((.(((((.((((((((((...))))..(((.((.....)))))..)))))).....(((.(((.(((((......))))).))))))))))).....)))))))).. ( -34.20) >DroSec_CAF1 16227 120 + 1 UCCAAGCCAUAAUCGGAUCCAUUGAGGCGGCACUGCUGGAUGCACUUCUCCAGGCGAUUCUCAAAGUCGGAUACACCCUGCUGCACGAAGCAGCGGGCUCGGGUCAAACGGAUCUGGCAG .....((((......(((((.((((((..((....(((((........)))))))...)))))).((..(((....((((((((.....)))))))).....)))..))))))))))).. ( -41.90) >DroSim_CAF1 17151 120 + 1 UCCAUGCCAUAAUCGGAUCCACUGAGGCGGCACUGCUGGAUGCACUUCUCCAGGCGAUUCUCAAAGUCGGAUACACCCUGCUGCACGAAGCAGCGGGCUCGUGUCAAACGGAUCUGGCAG ....((((....((((.....))))...))))((((..(((.(...........(((((.....)))))(((((..((((((((.....))))))))...)))))....).)))..)))) ( -45.40) >DroEre_CAF1 15531 120 + 1 UCCAAGCUAUAUGCAGAUCCAUGGAUUCGGCACUGCUGGAUGCACUUCUCCAAACGAUUCUCAAAGUCUGAUAUCCCCUGCUGCACGAAGCAGCGGGCUCUUGUCAAACGGAUCUGGCAC ...........(((((((((.((.(((((((...))))))).)).....................((.(((((...((((((((.....))))))))....))))).)))))))).))). ( -41.60) >DroYak_CAF1 16050 120 + 1 UCCGAGCCAUAGGCAGAUCCAUGGAGGCGACACUGCUGGAUGCACUUCUCCAGGCGAUUCUCAAAGUCGGAUAUGCCCUGCUGCACGAAGCAGCGGGCUCGGGUCAAGCGGAUCUGGCAG .(((((((...((((.((((.((((((.(....(((.....)))).))))))(((..........))))))).)))).((((((.....)))))))))))))((((........)))).. ( -49.40) >consensus UCCAAGCCAUAAUCGGAUCCAUUGAGGCGGCACUGCUGGAUGCACUUCUCCAGGCGAUUCUCAAAGUCGGAUAUACCCUGCUGCACGAAGCAGCGGGCUCGGGUCAAACGGAUCUGGCAG .....(((......((((((.......((((....(((((........)))))..(.....)...))))(((....((((((((.....)))))))).....)))....))))))))).. (-33.04 = -32.72 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:47 2006