Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,765,480 – 8,765,579 |
Length | 99 |
Max. P | 0.994550 |
Location | 8,765,480 – 8,765,579 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 73.68 |
Mean single sequence MFE | -34.25 |
Consensus MFE | -21.96 |
Energy contribution | -24.50 |
Covariance contribution | 2.54 |
Combinations/Pair | 1.14 |
Mean z-score | -2.54 |
Structure conservation index | 0.64 |
SVM decision value | 2.49 |
SVM RNA-class probability | 0.994550 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8765480 99 - 22224390 GAACUUGACUGCAACGCCAUCCAAAUGGUUGGCAGUCAAUGGGCCAUCG-CCUAGGCCUAUUUGGAUUGCACAGUGGCGGUCACAAAAGUAGGUU-------UA----UC-U ....((((((((...(((((....)))))..))))))))(((((....)-))))(((((((((.((((((......))))))....)))))))))-------..----..-. ( -38.60) >DroPse_CAF1 11686 77 - 1 AGACUUGACUGCAG--GCCUCACUGCGACAGCCAGUCAAUGGCCCAUAGGCCUAGGCUUC------AUGCCCCAUGCCCCACACA--------------------------- .((((.(..(((((--......)))))....).))))...((((....))))..(((...------..)))..............--------------------------- ( -21.60) >DroSec_CAF1 13716 100 - 1 GAACUUGACUGCAACGCCAUCCAAAUGGUUGGCAGUCAAUGGGGCAUCG-CCUAGGCCUAUUUGGAAUGCACAGUGGCGGUCACACAAGUAGGUU-------CU----UCUU ....((((((((...(((((....)))))..))))))))..((((...)-))).((((((((((...(((......)))......))))))))))-------..----.... ( -33.80) >DroSim_CAF1 14619 100 - 1 GAACUUGACUGCAACGCCAUCCAAAUGGUUGGCAGUCAAUGAGGCAUCG-CCUAGGCCUAUUUGGAUUGCACAGUGGCGGUCACAAAAGUAGGUU-------CU----CCUU ....((((((((...(((((....)))))..))))))))..((((...)-))).(((((((((.((((((......))))))....)))))))))-------..----.... ( -36.60) >DroEre_CAF1 12986 110 - 1 GAACUUGACUGCAACGCCAUCCAAAUGGCUGGCAGUCAAUGGCCCAUCG-CCUGGGCCUAUUUGGAUUGUACAAUGGCGGUCGCAAAAGUAGGUCGAAACGUACGUUAUA-U ....((((((((...(((((....)))))..)))))))).((((((...-..))))))..((((((((((......)))))).)))).(((.((....)).)))......-. ( -40.60) >DroYak_CAF1 13004 99 - 1 GAACUUGACUGCAACGCCAUCCAAAUGGCUGGCAGUCAAUGGCCCAUCG-CCUAGGCCUAUUUGGUUUGUACAAUGGCGGCCACACAACUAGGUU-------AC----UC-C .(((((((((((...(((((....)))))..))))))..(((((....(-((((((((.....))))))......)))))))).......)))))-------..----..-. ( -34.30) >consensus GAACUUGACUGCAACGCCAUCCAAAUGGCUGGCAGUCAAUGGCCCAUCG_CCUAGGCCUAUUUGGAUUGCACAAUGGCGGUCACAAAAGUAGGUU_______AC____UC_U ....((((((((...(((((....)))))..))))))))...............(((((((((.((((((......))))))....)))))))))................. (-21.96 = -24.50 + 2.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:45 2006