Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,760,037 – 8,760,167 |
Length | 130 |
Max. P | 0.985107 |
Location | 8,760,037 – 8,760,127 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 81.11 |
Mean single sequence MFE | -24.78 |
Consensus MFE | -16.17 |
Energy contribution | -16.55 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.10 |
Mean z-score | -2.68 |
Structure conservation index | 0.65 |
SVM decision value | 2.00 |
SVM RNA-class probability | 0.985107 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8760037 90 + 22224390 UUAACCCUAA----------CAAUU----------GCAAUUAAUCAUUUGUUUGCGAAUGCAAAUGAAAUGGCGAAAGUUUUU-GCCAUUUUUGUAGCAUAUAAAUUGUGU .........(----------(((((----------((((.(((....))).))))..((((....(((((((((((....)))-))))))))....))))...)))))).. ( -23.50) >DroSec_CAF1 8047 99 + 1 UUAACCAUUA----------CAAUUACAAUUUGCGGCAAUUAAUCAUUUGUUUACGAAUGCAAAUGAAAUGGCGAAAGUUUUU-GCCAUUCUUGCAGCAUAUAAAUU-UGC ..........----------(((........(((.((((....((((((((........))))))))(((((((((....)))-)))))).)))).))).......)-)). ( -24.36) >DroSim_CAF1 9010 99 + 1 UUAACCCUUA----------CAAUUACAAUUUGCGGCAAUUAAUCAUUUGUUUACGAAUGCAAAUGAAAUGGCGAAAGUUUUU-GCCAUUCUUGCAGCAUAUAAAUU-UGC ..........----------(((........(((.((((....((((((((........))))))))(((((((((....)))-)))))).)))).))).......)-)). ( -24.36) >DroEre_CAF1 7212 108 + 1 UUAACCCGCGUUUGCCGUCUCAAUUACAAUUGGCGGCCAUUAAUCAUUUGUUUGUGAAUGCAAAUGAAAUGGUGAAAGUUUGGUGCCAUUCUUGCAGCAU--AAAUU-CGC .......(((...((((((............))))))......((((((((........)))))))).(((.((.(((..((....))..))).)).)))--.....-))) ( -26.90) >consensus UUAACCCUUA__________CAAUUACAAUUUGCGGCAAUUAAUCAUUUGUUUACGAAUGCAAAUGAAAUGGCGAAAGUUUUU_GCCAUUCUUGCAGCAUAUAAAUU_UGC ................................((.((((....((((((((........))))))))((((((...........)))))).)))).))............. (-16.17 = -16.55 + 0.38)
Location | 8,760,056 – 8,760,167 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 80.44 |
Mean single sequence MFE | -29.90 |
Consensus MFE | -15.64 |
Energy contribution | -17.20 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.12 |
Mean z-score | -2.43 |
Structure conservation index | 0.52 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.912072 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8760056 111 + 22224390 UUAAUCAUUUGUUUGCGAAUGCAAAUGAAAUGGCGAAAGUUUUU-GCCAUUUUUGUAGCAUAUAAAUUGUGUUUUGUGCGAUAAAGUGCGCAGCAAGGGUGUGGGGUUGACC ((((((....((((((....))))))(((((((((((....)))-)))))))).....(((((...((((....((((((......))))))))))..))))).)))))).. ( -31.00) >DroSec_CAF1 8076 109 + 1 UUAAUCAUUUGUUUACGAAUGCAAAUGAAAUGGCGAAAGUUUUU-GCCAUUCUUGCAGCAUAUAAAUU-UGCUUUGUGCGAUA-AGUACGCAGCAAGGGUGGGGGGUCGACC ....((((((((........))))))))...(((....)))(((-.((((((((((((((........-))))..((((....-.))))...)))))))))).)))...... ( -34.10) >DroSim_CAF1 9039 105 + 1 UUAAUCAUUUGUUUACGAAUGCAAAUGAAAUGGCGAAAGUUUUU-GCCAUUCUUGCAGCAUAUAAAUU-UGCUUUGUGCGAUA-AGUACGCA----GGGUGAGGGGUCGACC ....((((((((........))))))))(((((((((....)))-))))))(((((((((........-))))..((((....-.)))))))----))....((......)) ( -31.30) >DroEre_CAF1 7251 100 + 1 UUAAUCAUUUGUUUGUGAAUGCAAAUGAAAUGGUGAAAGUUUGGUGCCAUUCUUGCAGCAU--AAAUU-CGCCUUGUGCGAUA-AGUA--CAGCAA------GGGGUCGACC ....((((((((........)))))))).(((.((.(((..((....))..))).)).)))--....(-(((((..(((....-....--..))).------.))).))).. ( -26.60) >DroYak_CAF1 6559 86 + 1 UUAAUCAUUUGUUUGUGAAUGCAAAUGAAAUGGCGAAAGUUUUG-GCCA-----------------UU-UGCCAUGUGCGAUA-AGUA--CAGCAA----AAAGGGUCGACC ....((((((((........))))))))...(((....)))(((-(((.-----------------((-(((..(((((....-.)))--))))))----)...)))))).. ( -26.50) >consensus UUAAUCAUUUGUUUGCGAAUGCAAAUGAAAUGGCGAAAGUUUUU_GCCAUUCUUGCAGCAUAUAAAUU_UGCUUUGUGCGAUA_AGUACGCAGCAAGGGUGAGGGGUCGACC ....((((((((........))))))))((((((...........))))))...................(((.(((((......))))).))).........((.....)) (-15.64 = -17.20 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:45 2006