Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,034,253 – 1,034,373 |
Length | 120 |
Max. P | 0.672429 |
Location | 1,034,253 – 1,034,373 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.54 |
Mean single sequence MFE | -25.30 |
Consensus MFE | -3.40 |
Energy contribution | -9.56 |
Covariance contribution | 6.16 |
Combinations/Pair | 1.15 |
Mean z-score | -1.60 |
Structure conservation index | 0.13 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.672429 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1034253 120 - 22224390 UUCCAACAAUAUUGUAUCUACAUAUGAUCCAGAUUAUUUCUAAUGACCUAUGCAUAUGCGAGUGAUUUACGAGUAAAUACAGUUGUUGCUUGCAUGCGCGUGAAUUAGGGCUUCAUUUAU ..((.......(((.(((.......))).))).......(((((....(((((.((((((((..((..((..((....)).)).))..)))))))).))))).))))))).......... ( -25.30) >DroSec_CAF1 6005 117 - 1 UUCCAACAUGAUUGUAUCUACAUACGAUCCAGAUUGUUUCUAAUGACAUAUGCAUAUGCGAGUGAUUUACGAGUAAAUACAUU---UGCUUGCAUGCGUGUGAAUUAGGGCUUCAUUUAU .........((((((((....))))))))..((..(((.(((((..(((((((((..((((((((((((....))))).))))---)))....))))))))).)))))))).))...... ( -32.50) >DroSim_CAF1 5416 117 - 1 UUCCAACAUGAUUGUAUCUACAUACGAUCCAGAUUGUUUCUAAUGACAUAUGCAUAUGCGAGUGAUUUACGAGUAAAUACAGU---UGCUUGCAUGCGUGUGAAUUAGGGCUUCAUUUAU .........((((((((....))))))))..((..(((.(((((..((((((((..((((((..(((.............)))---..)))))))))))))).)))))))).))...... ( -31.22) >DroEre_CAF1 5612 103 - 1 UUUCAACCAGAUUGUAUCA----AUGAUCCUGACUCUUCCUAAUGAUAUAUGCAUAUCUGAGUAAUCUACGAGUAAAUACAGU---UGGC----------UGAAUUAGGGCUUCAUUUAU ..................(----((((((((((.((..((...((.(((.(((......((....)).....))).)))))..---.)).----------.)).))))))..)))))... ( -16.30) >DroYak_CAF1 6026 96 - 1 UUUCAACAAGUUUGUAUCA----AUGAUGCUGAUUCCU---GUAUCCUUAUGCAUAUCUGCGUAAUUAACGAGCAAAUACUGU---U--------------GAAUUAGGGUUUCAUUUAU .(((((((.((((((.((.----..(((((........---))))).(((((((....))))))).....))))))))..)))---)--------------)))................ ( -21.20) >consensus UUCCAACAAGAUUGUAUCUACAUAUGAUCCAGAUUCUUUCUAAUGACAUAUGCAUAUGCGAGUGAUUUACGAGUAAAUACAGU___UGCUUGCAUGCG_GUGAAUUAGGGCUUCAUUUAU .........(((((((......)))))))..((....(((((((....(((((.((((((((((....((...........))...)))))))))).))))).)))))))..))...... ( -3.40 = -9.56 + 6.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:53 2006