Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,741,981 – 8,742,073 |
Length | 92 |
Max. P | 0.500000 |
Location | 8,741,981 – 8,742,073 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 93.16 |
Mean single sequence MFE | -13.76 |
Consensus MFE | -11.68 |
Energy contribution | -11.40 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.13 |
Mean z-score | -1.22 |
Structure conservation index | 0.85 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8741981 92 + 22224390 AAAAGAAAGCAGACAUCGGGGAAUCGAAGAGGCAUAAAAACAGCUUGAAAGUGUCCCGGUUCAAUAAUAAUAAAUAAUCAAACACGUUAUAG ...........((.(((((((...(....((((.........))))....)..))))))))).............................. ( -12.90) >DroSec_CAF1 22014 90 + 1 AAAAGAAAGCAGACAUCG--GAAUCGAAGAGGCAUGAAAACAGCCUUAAAGUGUCCCGGUUCAAUAAUAAUAAAUAAUCAAGCACGUUAUAG ....(((....(((((((--....))).(((((.((....)))))))....))))....))).............................. ( -13.20) >DroSim_CAF1 22762 90 + 1 AAAAGAAAGCAGACAUCG--GAAUCGAAGAGGCAUGAAAACAGCCUUAAAGUGUCCCGGUUCAAUAAUAAUAAAUAAUCAAGCACGUUAUAG ....(((....(((((((--....))).(((((.((....)))))))....))))....))).............................. ( -13.20) >DroEre_CAF1 22322 89 + 1 AAAAGAAAGCAGACAUCG--GAAUCGAACAGGCAUAAAAGCAGCCUGAAAGUGUCCCGGUUCAAUAAUAAUAAAUAAUCAAACAUGAUAAA- ....(((....(((((((--....))).(((((.........)))))....))))....)))..............((((....))))...- ( -15.10) >DroYak_CAF1 23072 89 + 1 AAAAGAAAGCAGACAUCG--GAAUCGAACAGGCAUUAAAACAGCCUGAAAGUGUCCCGGUUCAAUAAUAAUAAAUAAUCAAACACGAUAUA- ....(((....(((((((--....))).(((((.........)))))....))))....)))..............(((......)))...- ( -14.40) >consensus AAAAGAAAGCAGACAUCG__GAAUCGAAGAGGCAUAAAAACAGCCUGAAAGUGUCCCGGUUCAAUAAUAAUAAAUAAUCAAACACGUUAUAG ....(((....(((((((......))).(((((.........)))))....))))....))).............................. (-11.68 = -11.40 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:38 2006