Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,735,652 – 8,735,749 |
Length | 97 |
Max. P | 0.882152 |
Location | 8,735,652 – 8,735,749 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 71.81 |
Mean single sequence MFE | -17.51 |
Consensus MFE | -10.26 |
Energy contribution | -10.86 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.76 |
Structure conservation index | 0.59 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882152 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8735652 97 + 22224390 AGUUGCCAGCGAUCAUCGCAUGUCAGGGGCG---CCCCCCCCCCUUUCAAACCACCCUCCCCCUUCCACACACACAAUAAAA------U--AGACCCAUCAUGGGAUU .((((...(((.....))).((..(((((..---......)))))..)).........................))))....------.--...(((.....)))... ( -18.50) >DroSec_CAF1 15989 89 + 1 AGUUACCAGCGAUCAUCGCAUGUCAGGAGCAUCACCUCCCCCCCUUUCAACC-ACC--ACACCUCCC--------AUGAAAA------U--AGACCCAUCAUGGGAUU ........(((.....)))......((((......)))).............-...--.....((((--------((((...------.--.......)))))))).. ( -18.90) >DroSim_CAF1 16530 89 + 1 AGUUGCCAGCGAUCAUCGCAUGUCAGGGGCAUCCCCUCCCCCCCUUUCAACC-CCC--ACCCCUCCC--------AUAAAAA------U--AGACCCAUCAUGGAAUU .....((((((.....)))(((..(((((.......................-...--.)))))..)--------)).....------.--..........))).... ( -15.23) >DroEre_CAF1 16201 98 + 1 AGUUGCCAGCGAUCAUCGCAUGUCAGGGGCGUCC-GUCCCCCUCUAUCACUC-CUUC-CCCCCUCCC-AACACAAAAAAAAAUAAUAUUAACUACCC------GGAUU .((((...(((.....)))......(((((....-)))))............-....-........)-)))..........................------..... ( -15.40) >DroYak_CAF1 16797 97 + 1 ACUUGCCAGCGAUCAUCGCAUGUCAGGGGCGUCC-GUCCCC-UUUUUCGCUC-UCUC-CCCCCCUCC-ACCACCGAAAAAAA----AUU--CAACCCAUGAUGGGAUU ...((.(((((.....))).)).))(((((....-))))).-(((((((...-....-.........-.....)))))))..----...--...(((.....)))... ( -19.50) >consensus AGUUGCCAGCGAUCAUCGCAUGUCAGGGGCGUCCCCUCCCCCCCUUUCAACC_ACCC_CCCCCUCCC___CAC__AAAAAAA______U__AGACCCAUCAUGGGAUU ........(((.....)))......((((........)))).....................................................(((.....)))... (-10.26 = -10.86 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:37 2006