Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,732,262 – 8,732,381 |
Length | 119 |
Max. P | 0.905309 |
Location | 8,732,262 – 8,732,381 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 81.77 |
Mean single sequence MFE | -16.70 |
Consensus MFE | -15.71 |
Energy contribution | -15.60 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -0.97 |
Structure conservation index | 0.94 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.905309 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8732262 119 - 22224390 CACUAAACCAGGUUAAAUUAAUCGCUUGACUCAGAGAUUAGAAAUUUCUAUGAAUUUAUCAGUUUUGUGUUUAAUUUUUCCGUUUACUGUACACUUUUUUUUUUGUUUUUUUUUUGUGU ((.(((((..((..(((((((.(((..(((..((((((.....)))))).(((.....))))))..))).)))))))..))))))).)).((((.....................)))) ( -18.80) >DroSim_CAF1 13182 113 - 1 CACUAAACCAGGUUAAAUUAAUCGCUUGACUCAGAGAUUAGAAAUUUCUAUGAAUUUAUUAGUUUCGUAUUUAAUUUUUCCGUUUAAUGUACACUUUUUUCCU------UUUUUUUUGU ((.(((((..((..(((((((..((..((((...((((((((....))))...))))...))))..))..)))))))..))))))).))..............------.......... ( -14.70) >DroYak_CAF1 13335 103 - 1 CACUAAACCAGGCUAAAUUAAUUGCUUGACUCAGAGAUUAGAAAUUUCUAUGAGUUUAUCAGUUUUGUAUUUAAUUUUCCCGUUUAUAUUGUACUUUAUU----------------UUU ...(((((..((..(((((((.(((..(((..((((((.....)))))).(((.....))))))..))).)))))))..)))))))..............----------------... ( -16.60) >consensus CACUAAACCAGGUUAAAUUAAUCGCUUGACUCAGAGAUUAGAAAUUUCUAUGAAUUUAUCAGUUUUGUAUUUAAUUUUUCCGUUUAAUGUACACUUUUUU__U______UUUUUU_UGU ...(((((..((..(((((((.(((..((((...((((((((....))))...))))...))))..))).)))))))..)))))))................................. (-15.71 = -15.60 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:36 2006