Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,720,331 – 8,720,451 |
Length | 120 |
Max. P | 0.680133 |
Location | 8,720,331 – 8,720,451 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.56 |
Mean single sequence MFE | -43.15 |
Consensus MFE | -37.61 |
Energy contribution | -37.92 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.21 |
Mean z-score | -1.50 |
Structure conservation index | 0.87 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.680133 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8720331 120 - 22224390 AUUCUGGCCCUCUGCAUGGGCAACCACGAGCUGUACAUGCGUCGCCGCAAGCCGGACACCAUCGAUGUGCAGCAGAUGAAGGCGCAGGCGCGCGAGGAGAAGAAUGCCAAACAGCAGGAA .((((...((((..(((((....))....(((((((((.((...(((.....))).......)))))))))))..)))...((((....))))))))...))))(((......))).... ( -39.70) >DroPse_CAF1 1380 120 - 1 AUCCUGGCCCUCUGUAUGGGCAACCAUGAGCUGUACAUGCGUCGUCGCAAGCCCGACACGAUCGACGUGCAGCAAAUGAAGGCGCAGGCGCGCGAAGAGAAAAAUGCCAAACAGCAGGAG .(((((.....((((...((((..(((..(((((((.((((....))))....(((.....)))..)))))))..)))...((((....))))...........))))..))))))))). ( -42.00) >DroWil_CAF1 1172 120 - 1 AUCUUGGCCCUUUGCAUGGGUAACCAUGAGCUGUAUAUGCGUCGUCGCAAGCCCGACACAAUCGAUGUGCAGCAGAUGAAGGCGCAGGCGCGCGAGGAGAAGAAUGCUAAACAGCAAGAG .((((..((((((.(((((....))))).((((((((((.((((.(....)..)))).)).....))))))))....))))((((....))))..))..)))).((((....)))).... ( -41.00) >DroMoj_CAF1 1668 120 - 1 AUCCUGGCCCUCUGCAUGGGCAACCAUGAGCUCUACAUGCGUCGUCGCAAGCCCGACACGAUCGAUGUGCAGCAAAUGAAGGCCCAGGCGCGCGAAGAGAAGAACGCCAAACAGCAGGAG .((((((((.((..(((((....))))).(((.(((((.(((.((((......)))))))....))))).)))....)).))))..((((..(........)..)))).......)))). ( -44.30) >DroAna_CAF1 976 120 - 1 AUCCUGGCCCUCUGCAUGGGCAACCACGAGCUCUACAUGCGCCGUCGCAAGCCGGACACCAUCGAUGUCCAGCAGAUGAAGGCGCAGGCGCGCGAGGAAAAGAACGCCAAGCAGCAGGAG .(((((((((.......))))........(((.....((((((.(((...((.(((((.......))))).))...))).))))))((((..(........)..)))).)))..))))). ( -48.00) >DroPer_CAF1 1400 120 - 1 AUCCUGGCCCUCUGCAUGGGCAACCAUGAGCUGUACAUGCGUCGUCGCAAGCCCGACACGAUCGACGUGCAGCAAAUGAAGGCGCAGGCGCGCGAAGAGAAAAAUGCCAAACAGCAGGAG .((((((((.((..(((((....))))).(((((((.((((....))))....(((.....)))..)))))))....)).)))...((((..(.....).....))))......))))). ( -43.90) >consensus AUCCUGGCCCUCUGCAUGGGCAACCAUGAGCUGUACAUGCGUCGUCGCAAGCCCGACACGAUCGAUGUGCAGCAAAUGAAGGCGCAGGCGCGCGAAGAGAAGAAUGCCAAACAGCAGGAG .((((((((.((..(((((....))))).(((((((.((((....))))....(((.....)))..)))))))....)).)))...((((..(........)..))))......))))). (-37.61 = -37.92 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:32 2006