Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,719,875 – 8,719,995 |
Length | 120 |
Max. P | 0.988363 |
Location | 8,719,875 – 8,719,995 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.83 |
Mean single sequence MFE | -45.40 |
Consensus MFE | -38.27 |
Energy contribution | -38.63 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.19 |
Mean z-score | -3.00 |
Structure conservation index | 0.84 |
SVM decision value | 1.90 |
SVM RNA-class probability | 0.981719 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8719875 120 + 22224390 UCUCGACGGCCUCCAUAUUCUUGGCCUCCUCGAGGCGCUGCAGCAUCGCCUGCAGCUCCUUCUGGCGCAGCUCCAGCUCAUCCUUGGCGGCCUGCAGCUGCUUCAGCUGCUCCUCCAGCC ((((((.((((...........))))...)))))).(((((((......))))))).......((((.(((....)))).....(((.((...(((((((...))))))).)).)))))) ( -47.70) >DroVir_CAF1 1353 120 + 1 UCUCGACGGCCUCCAUGUUCUUGGCCUCCUCGAGGCGCUGCAGCAUAGACUGCAGCUCCUUUUGGCGCAGCUCAAGCUCAUCCUUGGCGGCCUGCAGCUGCUUCAGCUGCUCCUCCAAUC .......((((.(((((..(((((((.((..((((.(((((((......))))))).))))..)).)..)).))))..))....))).)))).(((((((...))))))).......... ( -49.70) >DroGri_CAF1 4414 120 + 1 UCUCAACGGCCUCCAUGUUCUUGGCCUCCUCGAGGCGCUGCAGCAUAGACUGCAGCUCCUUCUGGCGCAGCUCGAGCUCAUCCUUGGCGGCCUGCAGCUGCUUCAGCUGCUCCUCCAAUC .......((((.(((((..(((((((.((..((((.(((((((......))))))).))))..)).)..)).))))..))....))).)))).(((((((...))))))).......... ( -49.40) >DroWil_CAF1 815 120 + 1 UCUCAGCAGCCUCCAUGUUUUUGGCCUCUUCGAGACGCUGCAACAUGGCCUGCAAUUCCUUUUGACGCAACUCGAGCUCAUCCUUGGCGGCCUGCAGUUGUUUAAGUUGCUCCUCCAGUC .....((((...(((((((...(((.((.....)).)))..))))))).)))).............((((((..(((.((....))((.....))....)))..)))))).......... ( -29.70) >DroMoj_CAF1 1342 120 + 1 UCUCGACGGCCUCCAUAUUCUUGGCCUCCUCCAAGCGCUGCAGCAUCGAUUGCAGCUCCUUCUGGCGCAGCUCAAGCUCAUCCUUGGCGGCCUGCAGCUGCUUCAGCUGCUCCUCCAAUC .......((((.(((....(((((......))))).(((((.(((.....))).(((......)))))))).............))).)))).(((((((...))))))).......... ( -42.10) >DroAna_CAF1 651 120 + 1 UCUCGACGGCCUCCAUGUUCUUGGCCUCCUCGAGGCGCUGCAGCAUCGACUGCAGCUCCUUCUGGCGCAGCUCGAGCUCGUCCUUGGCGGCCUGCAGCUGCUUGAGCUGCUCCUCCAGCC .(((((.((((...........))))...)))))(((((((((......))))))).......((.(((((((((((.(((.....)))((.....)).))))))))))).))....)). ( -53.80) >consensus UCUCGACGGCCUCCAUGUUCUUGGCCUCCUCGAGGCGCUGCAGCAUCGACUGCAGCUCCUUCUGGCGCAGCUCGAGCUCAUCCUUGGCGGCCUGCAGCUGCUUCAGCUGCUCCUCCAAUC .......((((...........)))).....((((.(((((((......))))))).))))..((.((((((((((......))))(((((.....)))))...)))))).))....... (-38.27 = -38.63 + 0.36)
Location | 8,719,875 – 8,719,995 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.83 |
Mean single sequence MFE | -49.15 |
Consensus MFE | -43.75 |
Energy contribution | -43.20 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.28 |
Mean z-score | -2.36 |
Structure conservation index | 0.89 |
SVM decision value | 2.12 |
SVM RNA-class probability | 0.988363 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8719875 120 - 22224390 GGCUGGAGGAGCAGCUGAAGCAGCUGCAGGCCGCCAAGGAUGAGCUGGAGCUGCGCCAGAAGGAGCUGCAGGCGAUGCUGCAGCGCCUCGAGGAGGCCAAGAAUAUGGAGGCCGUCGAGA ((((......(((((((...))))))).((((.((..((.(((((....))).)))).((.((.(((((((......))))))).))))..)).))))...........))))....... ( -53.10) >DroVir_CAF1 1353 120 - 1 GAUUGGAGGAGCAGCUGAAGCAGCUGCAGGCCGCCAAGGAUGAGCUUGAGCUGCGCCAAAAGGAGCUGCAGUCUAUGCUGCAGCGCCUCGAGGAGGCCAAGAACAUGGAGGCCGUCGAGA (((.......(((((((...))))))).((((.(((....((..((((.(((...((...(((.((((((((....)))))))).)))...)).)))))))..))))).))))))).... ( -54.10) >DroGri_CAF1 4414 120 - 1 GAUUGGAGGAGCAGCUGAAGCAGCUGCAGGCCGCCAAGGAUGAGCUCGAGCUGCGCCAGAAGGAGCUGCAGUCUAUGCUGCAGCGCCUCGAGGAGGCCAAGAACAUGGAGGCCGUUGAGA ..........(((((((...))))))).((((.(((.((.(((((....))).)))).......((((((((....))))))))(((((...)))))........))).))))....... ( -50.50) >DroWil_CAF1 815 120 - 1 GACUGGAGGAGCAACUUAAACAACUGCAGGCCGCCAAGGAUGAGCUCGAGUUGCGUCAAAAGGAAUUGCAGGCCAUGUUGCAGCGUCUCGAAGAGGCCAAAAACAUGGAGGCUGCUGAGA ......((.(((...........((((((....((...(((((((....))).))))....))..)))))).(((((((...(.(((((...))))))...)))))))..))).)).... ( -35.30) >DroMoj_CAF1 1342 120 - 1 GAUUGGAGGAGCAGCUGAAGCAGCUGCAGGCCGCCAAGGAUGAGCUUGAGCUGCGCCAGAAGGAGCUGCAAUCGAUGCUGCAGCGCUUGGAGGAGGCCAAGAAUAUGGAGGCCGUCGAGA (((.......(((((((...))))))).((((.(((...((...((((.(((...((...(((.((((((........)))))).)))...)).))))))).)).))).))))))).... ( -47.90) >DroAna_CAF1 651 120 - 1 GGCUGGAGGAGCAGCUCAAGCAGCUGCAGGCCGCCAAGGACGAGCUCGAGCUGCGCCAGAAGGAGCUGCAGUCGAUGCUGCAGCGCCUCGAGGAGGCCAAGAACAUGGAGGCCGUCGAGA ((((......((((((.....)))))).((((.((..((.(((((....))).)))).((.((.((((((((....)))))))).))))..)).))))...........))))....... ( -54.00) >consensus GACUGGAGGAGCAGCUGAAGCAGCUGCAGGCCGCCAAGGAUGAGCUCGAGCUGCGCCAGAAGGAGCUGCAGUCGAUGCUGCAGCGCCUCGAGGAGGCCAAGAACAUGGAGGCCGUCGAGA ..((.((...((((((.....)))))).((((.(((.((.(((((....))).)))).......(((((((......)))))))(((((...)))))........))).)))).)).)). (-43.75 = -43.20 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:31 2006