Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,719,590 – 8,719,681 |
Length | 91 |
Max. P | 0.578997 |
Location | 8,719,590 – 8,719,681 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 80.57 |
Mean single sequence MFE | -29.76 |
Consensus MFE | -18.88 |
Energy contribution | -18.85 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.19 |
Mean z-score | -1.53 |
Structure conservation index | 0.63 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578997 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8719590 91 + 22224390 UGCUGCGGCGUUGUCGACGCGGCCAGCAGAGCGGCAGCGGCUUCAGCCUACAAAAACGACAAUGUUC------AGUAUAAAGUUGAAC-ACAAAAUGG (((((.((((((((((..((.(((.((...))))).))(((....)))........)))))))))))------))))...........-......... ( -30.60) >DroGri_CAF1 4146 94 + 1 UGUUGCGGCGUGGUGGAUGCAGCCAGCAGUGCAGCAGCAGCCUCGGCCUAAACA--AAACGUAAU--CAGAUAAUUGUUAAGAUAAGCGACAAAGGCG ((((((.(((((.(((......))).)).))).))))))......((((..((.--....))...--.......(((((......)))))...)))). ( -23.60) >DroSec_CAF1 400 91 + 1 UGCUGCGGCGUUGUCGACGCGGCCAGCAGAGCGGCAGCGGCUUCGGCCUACAAAAACGACAAUGUUC------AGUAUAAAGUUGGAC-ACAGAAUGG (((((.((((((((((..((.(((.((...))))).))(((....)))........)))))))))))------))))...........-......... ( -33.70) >DroSim_CAF1 400 91 + 1 UGCUGCGGCGUUGUCGACGCGGCCAGCAGAGCGGCAGCGGCUUCGGCCUACAAAAACGAUAAUGUUC------AGUAUACAGAUGGAC-ACAAAAUGG (((((.((((((((((..((.(((.((...))))).))(((....)))........)))))))))))------))))..((..((...-.))...)). ( -32.00) >DroEre_CAF1 403 91 + 1 UGCUGCGGCGUUGUGGACGCGGCCAGCAGAGCGGCAGCGGCUUCAGCCUACAAAAAUGAUAAUAUUC------AGUAUAAGGUUGAAC-ACGCAGGCG ((((((.(((((...))))).).)))))...((.(.(((..((((((((.......(((......))------).....)))))))).-.))).).)) ( -32.80) >DroYak_CAF1 401 91 + 1 UGCUGCGGCGUUGUCGAUGCGGCCAGCAGAGCGGCAGCGGCUUCAGCCUACAAAAAUGACAAUAUUC------AGUAUAAAGUUGAAC-ACGAAAGCA .(((..(.((((((((.(((.....)))...)))))))).)((((((.........(((......))------).......)))))).-.....))). ( -25.89) >consensus UGCUGCGGCGUUGUCGACGCGGCCAGCAGAGCGGCAGCGGCUUCAGCCUACAAAAACGACAAUAUUC______AGUAUAAAGUUGAAC_ACAAAAGCG .((((.((((((((((..((.....))....))))))).))).))))................................................... (-18.88 = -18.85 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:29 2006