Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,717,087 – 8,717,193 |
Length | 106 |
Max. P | 0.996409 |
Location | 8,717,087 – 8,717,193 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 87.93 |
Mean single sequence MFE | -31.72 |
Consensus MFE | -26.49 |
Energy contribution | -27.56 |
Covariance contribution | 1.07 |
Combinations/Pair | 1.06 |
Mean z-score | -2.65 |
Structure conservation index | 0.84 |
SVM decision value | 2.69 |
SVM RNA-class probability | 0.996409 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8717087 106 - 22224390 CGGUUUUCACUUUUGGUCAGGGCUGCUCUGAUUCCAAGAGCAAGAACCACACUUAAUGGCUAAGUUCCGGAUCCUACUCAAUAGGGAUUAACUGCCGCCAGACCAA .((((((..(((((((((((((...))))))..)))))))..))))))........((((..((((...((((((........))))))))))...))))...... ( -34.00) >DroSec_CAF1 152143 105 - 1 CGGUUUUCACUUUUGGUCAGGGGUGCUCCUAUUCCAAGAGCAAGAACCACACUUAAUGGCUAAGUU-CGGAUCCUUCUCAAUAGGGAUUAACUGCGGCCAGACCAA .((((((..(((((((..((((....))))...)))))))..))))))........(((((.((((-..(((((((......)))))))))))..)))))...... ( -35.50) >DroSim_CAF1 117379 105 - 1 CGGUUUUCACUUUUGGUCAGGGGUGCUCCUAUUCCAAGAGCAAGAACCACACUUAAUGGCUAAGUU-CGGAUCCUUCUCAAUAGGGAUUAACUGCCGCCAGACCAA .((((((..(((((((..((((....))))...)))))))..))))))........((((..((((-..(((((((......)))))))))))...))))...... ( -33.60) >DroEre_CAF1 166549 87 - 1 CGGUUUUAACUUUUGGUCA----------------AAGAGCAAGAACC--ACUUAAUGGCUAAGUU-CUGAUCCUUCUCAAUAGGGAUUAACUGCCGCCAGACCAA .((((((..(((((.....----------------)))))..))))))--......((((..(((.-.((((((((......)))))))))))...))))...... ( -23.50) >DroYak_CAF1 159963 102 - 1 CGGUUUUCACUUUUGGUCAGGGGUGCUCCUAUUCCAAGAGCAAGAACC--ACUUAAUGGCUAGGU--CCGAUCCUUCUCAAUACGGAUUCACUGCAGCCAGACCAA .((((((..(((((((..((((....))))...)))))))..))))))--......(((((.(((--..(((((..........))))).)))..)))))...... ( -32.00) >consensus CGGUUUUCACUUUUGGUCAGGGGUGCUCCUAUUCCAAGAGCAAGAACCACACUUAAUGGCUAAGUU_CGGAUCCUUCUCAAUAGGGAUUAACUGCCGCCAGACCAA .((((((..(((((((..((((....))))...)))))))..))))))........((((..((((...((((((........))))))))))...))))...... (-26.49 = -27.56 + 1.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:28 2006