Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,714,190 – 8,714,359 |
Length | 169 |
Max. P | 0.960429 |
Location | 8,714,190 – 8,714,280 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.48 |
Mean single sequence MFE | -18.57 |
Consensus MFE | -14.31 |
Energy contribution | -14.88 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -2.16 |
Structure conservation index | 0.77 |
SVM decision value | 1.51 |
SVM RNA-class probability | 0.960429 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8714190 90 + 22224390 CCACAUCCA------------------------------CAGCCAAGAUCACAUCCACAACCACGAGUUUAAAUAUCUUAAAUGCCUCGAGAAGCUCACUCGAUGGCUUCGCGGAAAUUC .........------------------------------.....................((.(((((((((.....))))))((((((((.......))))).))).))).))...... ( -17.50) >DroSec_CAF1 149272 90 + 1 CCACAUCCA------------------------------CAACCAAGAUCGCAUCCACAUCCACGAGUUUAAAUAUCUUAAAUGCCUCGAGAAGCUCACUCGAUGGCUUCGAGGAAAUUC .........------------------------------....................(((.(((((((((.....))))))((((((((.......))))).))).))).)))..... ( -18.10) >DroSim_CAF1 114358 90 + 1 CCACAUCCA------------------------------CAACCAAGAUCACAUCCACAUCCACGAGUUUAAAUGUCUUAAAUGCCUCGAGAAGCUCACUCGAUGGCUUCGCGGAAAUUC .........------------------------------....................(((.(((((((((.....))))))((((((((.......))))).))).))).)))..... ( -18.90) >DroYak_CAF1 157015 120 + 1 CCACAUCCACAUCCACAUCCUCAUCCACAUCCACUUCAACAACGAAGAGCACAUGCACAUCCAUGAGUUUAAAUAUCUUAAAUGCCUCUAGAAGCUCACUCGCUGGCUUCGCGGAAAUUC ...........(((.(...(((((.........((((......)))).((....))......))))).......................((((((........))))))).)))..... ( -19.80) >consensus CCACAUCCA______________________________CAACCAAGAUCACAUCCACAUCCACGAGUUUAAAUAUCUUAAAUGCCUCGAGAAGCUCACUCGAUGGCUUCGCGGAAAUUC ...........................................................(((.(((((((((.....))))))((((((((.......))))).))).))).)))..... (-14.31 = -14.88 + 0.56)
Location | 8,714,240 – 8,714,359 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 88.11 |
Mean single sequence MFE | -38.42 |
Consensus MFE | -25.48 |
Energy contribution | -26.80 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.10 |
Mean z-score | -2.31 |
Structure conservation index | 0.66 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622350 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8714240 119 + 22224390 AAUGCCUCGAGAAGCUCACUCGAUGGCUUCGCGGAAAUUCUGCUUUGAAAAGUGCCGCCUAGCCAGGCUGUCACCAUCGAUAAAGUUGGAAAAGCUGCCUGGCGAAGUGGAAAAAUAUU ...((((((((.......))))).)))...((((.....))))...........((((...(((((((.((..(((.(......).)))....)).)))))))...))))......... ( -40.40) >DroSec_CAF1 149322 118 + 1 AAUGCCUCGAGAAGCUCACUCGAUGGCUUCGAGGAAAUUCUGCUUUGAAAAGUGCCGCCUAGCCAGGCUGUCACCAUCGAUAAAGGUGGAAAAGCUGGCUGGCAAGGUGGAA-AAUAUU ...((((((((.......))))).)))(((((((........))))))).....((((((.(((((.(.((..(((((......)))))....)).).))))).))))))..-...... ( -44.80) >DroSim_CAF1 114408 119 + 1 AAUGCCUCGAGAAGCUCACUCGAUGGCUUCGCGGAAAUUCUGCUUUGAAAAGUGCCGCCUAGCCAGGCUGUCACCAUCGAUAAAAGUGGAAAAGCUGGCUGGCAAAGUGGAAAAAUAUU ...((((((((.......))))).)))(((((((...(((......))).....))(((.((((((.((....((((........))))...)))))))))))...)))))........ ( -38.20) >DroEre_CAF1 163701 107 + 1 AAUGCCUCUAGAAGCUCAA-CGAUGGCUUCGCGGAAAUUCUGCUUUGAAAAGUGCCGC----------UGUCACCGUCGAUAGAGGUGGAAAAGCUGCCUGGCAAGGGGGAA-AGUAUU (((((.(((.(((((.((.-...)))))))..)))..((((.(((((...((.((.((----------(.(((((.((....)))))))...))).))))..))))).))))-.))))) ( -36.50) >DroYak_CAF1 157095 108 + 1 AAUGCCUCUAGAAGCUCACUCGCUGGCUUCGCGGAAAUUCUGCUUUGAAAAGUGCCGC----------CGUCACCAUCGAUAAAGGUGGAAAAGCUGCCUGGCAAAGUGGAG-AAAAUU ......(((.((((((........))))))..)))..(((..(((((...((.((.((----------.....(((((......)))))....)).))))..)))))..)))-...... ( -32.20) >consensus AAUGCCUCGAGAAGCUCACUCGAUGGCUUCGCGGAAAUUCUGCUUUGAAAAGUGCCGCCUAGCCAGGCUGUCACCAUCGAUAAAGGUGGAAAAGCUGCCUGGCAAAGUGGAA_AAUAUU ..((((....((((((........))))))((((...(((((((((.....((((.((((....)))).).)))........)))))))))...))))..))))............... (-25.48 = -26.80 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:27 2006