Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,710,455 – 8,710,560 |
Length | 105 |
Max. P | 0.629206 |
Location | 8,710,455 – 8,710,560 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 80.63 |
Mean single sequence MFE | -24.26 |
Consensus MFE | -13.35 |
Energy contribution | -13.85 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.08 |
Structure conservation index | 0.55 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.629206 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8710455 105 + 22224390 CAGACCCUCCUCAGACAGAUACAAUCCGGCAUAACAAAAGAUCUCU-UUGCAAAUUGUUUAUUUGCUGCUUGGGUGAUCAGCAAACGGAUUGUU-UAUGCUAAUAUC------ ............((.((...(((((((((((.....((((....))-))......)))...(((((((.((....)).))))))))))))))).-..))))......------ ( -23.70) >DroPse_CAF1 171608 91 + 1 CAAAAAC---UCA-------------UCGCAUAACAAAAGAUCUGUUUUGCAAAUUGUUUAUUUGCUGCUUGGCUGAUCAGCAAACGGAUUGUUUUAUGCAAAUAUC------ .......---...-------------..((((((.(...(((((((((.((((((.....))))))......(((....)))))))))))).).)))))).......------ ( -22.40) >DroEre_CAF1 160080 102 + 1 CAGAGCC---UCAGACAGACACAAUCCGGCAUAACAAAAGAUCUCU-UUGCAAAUUGUUUAUUUGCUGCUUGGCUGAUCAGCAAACGGAUUGUU-UAUGCUAAUACC------ .......---..((.((...(((((((((((.....((((....))-))((((((.....)))))))))...(((....)))...)))))))).-..))))......------ ( -24.40) >DroYak_CAF1 153233 102 + 1 CAGACCC---UCAGACAGACACAAUCCGGCAUAACAAAAGAUCUCU-UUGCAAAUUGUUUAUUUGCUGCUUGGCUGAUCAGCAAACGGAUUGUU-UAUGCUAAUAUC------ .......---..((.((...(((((((((((.....((((....))-))((((((.....)))))))))...(((....)))...)))))))).-..))))......------ ( -24.40) >DroAna_CAF1 135183 108 + 1 AAGGGAA---AAAACCUGAGACGGUCCGGCACAACAAAAGAUCUCU-UUGCAAAUUGUUUAUUUGCUGCUCCGCUGAUCACCAAACGGAUUGUU-UAUGCUAAUGUCCCUACC .(((((.---........(((((((((((((.....((((....))-))((((((.....))))))))).....((.....))..)))))))))-).........)))))... ( -28.27) >DroPer_CAF1 158923 91 + 1 CAAAAAC---UCA-------------UCGCAUAACAAAAGAUCUGUUUUGCAAAUUGUUUAUUUGCUGCUUGGCUGAUCAGCAAACGGAUUGUUUUAUGCAAAUAUC------ .......---...-------------..((((((.(...(((((((((.((((((.....))))))......(((....)))))))))))).).)))))).......------ ( -22.40) >consensus CAGAAAC___UCAGACAGA_ACAAUCCGGCAUAACAAAAGAUCUCU_UUGCAAAUUGUUUAUUUGCUGCUUGGCUGAUCAGCAAACGGAUUGUU_UAUGCUAAUAUC______ ............................(((((......(((((.....((((((.....))))))......(((....)))....)))))....)))))............. (-13.35 = -13.85 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:25 2006