Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,704,216 – 8,704,329 |
Length | 113 |
Max. P | 0.595503 |
Location | 8,704,216 – 8,704,329 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 93.16 |
Mean single sequence MFE | -22.68 |
Consensus MFE | -18.28 |
Energy contribution | -18.52 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.44 |
Structure conservation index | 0.81 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.595503 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8704216 113 - 22224390 CCCUUUCGCAAAAUCCAGCAUACAUUUCUAUUUAUAUUAAAAAUGAUGAAGUGAAAGUGCAGCGGUCACUCACACACAAUCGGGCAAACACAAACAGGAGGCGAAAUCAAUUA ...((((((....(((..(((.(((((.((.......)).))))))))..(((....(((..((((............)))).)))..))).....))).))))))....... ( -21.40) >DroSec_CAF1 139549 105 - 1 CCCUUUCGCAAAGUCCAGCAUACAUUUCUAUUUAUAUUAAAAAUGAUGAAGUGAAAGUGCAGCGGUCAGUCAC--UCGAUCGGGCAAA------CAGAAGGCGAAAUCAAUUA ...((((((...((((.((((.((((((...((((.......)))).))))))...))))...((((......--..))))))))...------(....)))))))....... ( -23.60) >DroSim_CAF1 104455 105 - 1 CCCUUUCGCAAAGUCCAGCAUACAUUUCUAUUUACAUUAAAAAUGAUGAAGUGAAAGUGCAGCGGUCAGUCAC--UCGAUCGGGCAAA------CAGAAGGCGAAAUCAAUUA ...((((((...((((.((...(((((.(((((.(((((....)))))))))).)))))..))((((......--..))))))))...------(....)))))))....... ( -23.80) >DroEre_CAF1 153971 104 - 1 CCCUUUCGCAAAAUCCAGCAUA-AUUUCUAUUUAUAUUAAAAAUUAUGAAGUGAAAGUGCAGCGGUCAGUCAC--UCGACCGGGCAAA------CAGAAGGCGAAAUCAAUUA ...((((((....(((..((((-((((.((.......)).))))))))..).))...(((..(((((......--..))))).)))..------......))))))....... ( -23.90) >DroYak_CAF1 146519 105 - 1 CCCUUUCGCAAAAUCCAGCAUACAUUUCUAUUUAUAUUAAAAAUUAUGAAGUGAAAGUGCAGCGGUCAGUCAC--ACGAUCGGGCAAA------CAGAAGGCGAAAUCAAUUA ...((((((........((((.((((((.((((.......))))...))))))...))))..(((((......--..)))))......------......))))))....... ( -20.70) >consensus CCCUUUCGCAAAAUCCAGCAUACAUUUCUAUUUAUAUUAAAAAUGAUGAAGUGAAAGUGCAGCGGUCAGUCAC__UCGAUCGGGCAAA______CAGAAGGCGAAAUCAAUUA ...((((((........((((.((((((.((((.......))))...))))))...))))..(((((..........)))))..................))))))....... (-18.28 = -18.52 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:24 2006