Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,699,337 – 8,699,433 |
Length | 96 |
Max. P | 0.816267 |
Location | 8,699,337 – 8,699,433 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 79.35 |
Mean single sequence MFE | -24.77 |
Consensus MFE | -15.66 |
Energy contribution | -15.94 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.12 |
Mean z-score | -1.92 |
Structure conservation index | 0.63 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.816267 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8699337 96 - 22224390 ACA-UCGCUGAUUGGGAAUUACCUGUGCCUAGGACGAAACUGUCCUUUUAAGGCAAUCGACUUUCCAAAUCGCAGAGAGUCUGCGAUCGCAGCUGGA ...-..((((.(((((((.......(((((((((((....))))))....)))))......)))))))(((((((.....)))))))..)))).... ( -35.32) >DroSec_CAF1 134857 83 - 1 ACA-UCGCUGAUUGGGAAUUACCUGUACCUAGGACC-AACUGUCCUUUUAAGGCAAACGACUUUCCAAAUCACAGAGAGUCU------------GGA ...-....(((((.((((.........((((((((.-....)))))....))).........)))).)))))(((.....))------------).. ( -17.47) >DroSim_CAF1 99795 83 - 1 ACA-UCGCUGAUUGGGAAUUACCUGUGCCUAGGACC-AACUGUCCUUUUAAGGCAAACGACUUUCCAAAUCACAGAGAGUCU------------GGA ...-....(((((.((((.......((((((((((.-....)))))....))))).......)))).)))))(((.....))------------).. ( -23.64) >DroEre_CAF1 149237 87 - 1 ACA-UGGCUGAUUGGAAAUUACCUGUGCCUAGGACC-AACUGGCCUUUUAAGGCAAUUGACUUUCCAAAUCAAUGCGA--------UCACAACUGGA ..(-(.((((((((((((.......((((((((.((-....)))))....)))))......))))).)))))..)).)--------).......... ( -21.62) >DroYak_CAF1 141162 79 - 1 AAAGCGGCUGAUUGGGAAUUACCUGUGCCUAGGACC-AACUGGCCUUUUAGGGCAAUCGACUUUCCAAAU-----------------CACAGCUGGA ....((((((.(((((((.......((((((((.((-....)))))....)))))......)))))))..-----------------..)))))).. ( -25.82) >consensus ACA_UCGCUGAUUGGGAAUUACCUGUGCCUAGGACC_AACUGUCCUUUUAAGGCAAUCGACUUUCCAAAUCACAGAGAGUCU_____C_CA_CUGGA ...........(((((((.......((((((((((......)))))....)))))......)))))))............................. (-15.66 = -15.94 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:21 2006