Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,682,434 – 8,682,542 |
Length | 108 |
Max. P | 0.609280 |
Location | 8,682,434 – 8,682,542 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 91.29 |
Mean single sequence MFE | -31.78 |
Consensus MFE | -25.44 |
Energy contribution | -25.08 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.20 |
Mean z-score | -1.44 |
Structure conservation index | 0.80 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.609280 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8682434 108 - 22224390 CGUUUUGCGGAGAUUCCACUGUUUUUUUUUUUGUGGGGCCAUUUGUGCGUUUCAAGUGAGGCUUCGCAAACGAAUGCCGGAAGUUGCCUUUCGAAUGCAAAAUGCAAA ((((((((((.....))...((...(((.((((((((((((((((.......)))))..))))))))))).))).))((((((....))))))...)))))))).... ( -31.90) >DroSec_CAF1 118806 106 - 1 CGUUUUGCGAUGAUUCCACUGU-U-UUUUUUUGUGAGGCCAUUUGUGCGUUUCAAGUGAGGCUCCGCAAACGAAUGCCGGAAGUUGCCUUUCGAAUGCAAAAUGCAAA (((((((((...........((-.-(((.((((((..((((((((.......)))))..)))..)))))).))).))((((((....))))))..))))))))).... ( -29.30) >DroSim_CAF1 83532 106 - 1 CGUUUU-CGGAAAUUCUACUGUAU-UUUUUUUGUGAGGCCAUUUGUGCGUUUCAAGUGAGGCUCCGCAAACGAAUGCCGGAAGUUGCCUUUCGAAUGCAAAAUGCAAA .((.((-(((((...((.((((((-((..((((((..((((((((.......)))))..)))..)))))).))))).))).)).....))))))).)).......... ( -26.10) >DroEre_CAF1 130723 103 - 1 CGUCUUGCGGAGACUCCACUGU-----UUUUUGUGAGGCCAUUUGUGCGUUUCAAGUGAGGCUCCGCAAGCGAAUGCCGGAAGUUGCCUUUCGAAUGCAAAAUGCAAA ((.(((((((((.(..((((..-----......((((((((....)).))))))))))..)))))))))))).....((((((....))))))..(((.....))).. ( -35.70) >DroYak_CAF1 122430 103 - 1 UGUCAUGAGGAGGUUCCACUGU-----UCUUUGUGGGGCCAUUUGUGCGUUUCAAGUGAGGCUCCGCAAACGAAUGCCGGAAGUUGCCUUUCGAAUGCAAAAUGCAAA ..((..((((((.((((..(((-----((((((((((((((((((.......)))))..))))))))))).)))))..)))).)).))))..)).(((.....))).. ( -35.90) >consensus CGUUUUGCGGAGAUUCCACUGU_U_UUUUUUUGUGAGGCCAUUUGUGCGUUUCAAGUGAGGCUCCGCAAACGAAUGCCGGAAGUUGCCUUUCGAAUGCAAAAUGCAAA .((((((((((((..............))))))))))))(((((.(((((((.....(((((((((((......)).))))....)))))..)))))))))))).... (-25.44 = -25.08 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:19 2006