Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,676,451 – 8,676,549 |
Length | 98 |
Max. P | 0.500000 |
Location | 8,676,451 – 8,676,549 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.69 |
Mean single sequence MFE | -31.24 |
Consensus MFE | -12.47 |
Energy contribution | -13.59 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.20 |
Mean z-score | -2.00 |
Structure conservation index | 0.40 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8676451 98 - 22224390 GUCACCGAUUCGGAUACGGAUCGAGGCAACAUAUUCGGAGGCA-CUGUAUAUAU------AU----AUAUGCAUAUGUGUU----------GUGUAUUGGUUUC-GUUUUGCAGUUCGGC (((..(((((((....)))))))..((((......(((((.((-..((((((((------((----(((....)))))).)----------)))))))).))))-)..)))).....))) ( -25.20) >DroSec_CAF1 112977 102 - 1 GUCGCCGAUUCGGAUACGGAUCGAAG-GACAUAUUCAGGUGCA-CUGUAUAUAUGUACAUAU----AUAUGCAUAUGUGUU----------GCGUAUCGGUUUC-GUUUU-CAGUUGGGC ....((((((.(((.(((((((((.(-.((((((.(((.....-)))...)))))).)....----.((((((.......)----------))))))))).)))-)).))-))))))).. ( -29.20) >DroSim_CAF1 77273 106 - 1 GUCACCGAUUCGGAUACGGAUCGAGG-GACAUAUUCAGGUGCA-CUGUCUAUAUGUAUAUAUGUACAUAUGCAUAUGUGUU----------GUGUAUCGGUUUC-GUUUU-CAGUUGGGC (((.((((((((....))))))).).-))).......((((((-(.(..(((((((((((......)))))))))))..).----------)))))))......-.....-......... ( -32.30) >DroEre_CAF1 124983 99 - 1 GUCCCCGAUUCGGAUACGGAUCGAGG-GACAUAUUCAGGUGCAAGUAUAUAUAUGU----GC----AUAUGCAUAUGUGCG----------GGGCAUUGGUUUC-GUUUU-CAGUUCGGC ((((((((((((....))))))).))-)))..........((........((((((----((----....))))))))(((----------..((....))..)-))...-.......)) ( -35.30) >DroYak_CAF1 116235 110 - 1 GUCCCCGAUUCAGUUACGGAUCGAGG-GACAUAUUCAGGUGCAACUAUAUAUACAU----AU----AUAUGCAUAUGUACAUUUAUGUUGCGUGUACUGGAUUCAGUUUU-CAGUUCGGC (((((((((((......)))))).))-)))..........(((((((.((.(((((----((----......))))))).)).)).))))).((.((((((.......))-)))).)).. ( -34.20) >consensus GUCACCGAUUCGGAUACGGAUCGAGG_GACAUAUUCAGGUGCA_CUGUAUAUAUGU____AU____AUAUGCAUAUGUGUU__________GUGUAUUGGUUUC_GUUUU_CAGUUCGGC (((..(((((((....)))))))....))).......((((((....(((((((((..............))))))))).............))))))...................... (-12.47 = -13.59 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:13 2006