Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,667,774 – 8,667,869 |
Length | 95 |
Max. P | 0.965121 |
Location | 8,667,774 – 8,667,869 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 91.74 |
Mean single sequence MFE | -29.94 |
Consensus MFE | -24.86 |
Energy contribution | -25.02 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.43 |
Structure conservation index | 0.83 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.704118 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8667774 95 + 22224390 UAUGCUAGUUUUUUUUCAGUGUACCGGCAGACCGGGCACGUUGCAAGUUGCAGCUUCGUUUGCUUUGCCGCUGCUGUUCAAUGGCCGUUGCCAUU ................(((((...(((((((.(((((..(((((.....)))))...))))).))))))).)))))...((((((....)))))) ( -28.90) >DroSec_CAF1 104446 94 + 1 UAUGCCAGUUUC-UUUCAGUGUACCAGCAGACCGGGCACGUUGCAAGUUGCAGCUUCGUUUGCUUUGCCGCUGCUGUUCAAUGGCCGUUGCCAUU ...((((.....-...(((((....(((((((..(((....(((.....))))))..)))))))....)))))........)))).......... ( -26.49) >DroSim_CAF1 68833 94 + 1 UAUGCCAGUUUC-UUUCAGUGUACCAGCAGACCGGGCACGUUGCAAGUUGCAGCUUCGUUUGCUUUGCCGCUGCUGUUCAAUGGCCGUUGCCAUU ...((((.....-...(((((....(((((((..(((....(((.....))))))..)))))))....)))))........)))).......... ( -26.49) >DroEre_CAF1 116202 94 + 1 UAUAGAUAUUUU-UUCCAGUGCACCGGGCGACCGGGCACGUUGCAAGUUGCAGCUCCGUUUGCUUUGCCGCUGCUGUUCAAUGGCCAUUGCCAUU .((((.......-.....((((.((((....))))))))((.(((((..((((......))))))))).))..))))..((((((....)))))) ( -30.70) >DroYak_CAF1 107891 94 + 1 UAUGCAUAUUUU-UUUCAGUGCACCGGGAGACCGGGCACGUUGCAAGUUGCAGCUCCGUUUGCUUGGCCGCUGCUGUUCAAUGGCCGUUGCCAUU ...(((......-.....((((.((((....))))))))(((((.....)))))......))).((((.((.(((((...))))).)).)))).. ( -37.10) >consensus UAUGCAAGUUUU_UUUCAGUGUACCGGCAGACCGGGCACGUUGCAAGUUGCAGCUUCGUUUGCUUUGCCGCUGCUGUUCAAUGGCCGUUGCCAUU ..................((((.((((....))))))))...(((.((.(((((.......)))..)).))))).....((((((....)))))) (-24.86 = -25.02 + 0.16)
Location | 8,667,774 – 8,667,869 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 91.74 |
Mean single sequence MFE | -27.46 |
Consensus MFE | -24.06 |
Energy contribution | -23.58 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.10 |
Mean z-score | -1.71 |
Structure conservation index | 0.88 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965121 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8667774 95 - 22224390 AAUGGCAACGGCCAUUGAACAGCAGCGGCAAAGCAAACGAAGCUGCAACUUGCAACGUGCCCGGUCUGCCGGUACACUGAAAAAAAACUAGCAUA ((((((....)))))).....((.(((((............)))))..........(((((.((....)))))))...............))... ( -25.90) >DroSec_CAF1 104446 94 - 1 AAUGGCAACGGCCAUUGAACAGCAGCGGCAAAGCAAACGAAGCUGCAACUUGCAACGUGCCCGGUCUGCUGGUACACUGAAA-GAAACUGGCAUA ((((((....)))))).....((.(((((............)))))..(((.((..(((((.((....)))))))..)).))-)......))... ( -24.90) >DroSim_CAF1 68833 94 - 1 AAUGGCAACGGCCAUUGAACAGCAGCGGCAAAGCAAACGAAGCUGCAACUUGCAACGUGCCCGGUCUGCUGGUACACUGAAA-GAAACUGGCAUA ((((((....)))))).....((.(((((............)))))..(((.((..(((((.((....)))))))..)).))-)......))... ( -24.90) >DroEre_CAF1 116202 94 - 1 AAUGGCAAUGGCCAUUGAACAGCAGCGGCAAAGCAAACGGAGCUGCAACUUGCAACGUGCCCGGUCGCCCGGUGCACUGGAA-AAAAUAUCUAUA ((((((....)))))).....((((((((............)))))....)))...((((((((....)))).))))((((.-......)))).. ( -28.40) >DroYak_CAF1 107891 94 - 1 AAUGGCAACGGCCAUUGAACAGCAGCGGCCAAGCAAACGGAGCUGCAACUUGCAACGUGCCCGGUCUCCCGGUGCACUGAAA-AAAAUAUGCAUA ((((((....)))))).....(((((..((........)).)))))....((((..((((((((....)))).))))(....-).....)))).. ( -33.20) >consensus AAUGGCAACGGCCAUUGAACAGCAGCGGCAAAGCAAACGAAGCUGCAACUUGCAACGUGCCCGGUCUGCCGGUACACUGAAA_AAAACUGGCAUA ((((((....))))))...(((..(((((............)))))..........(((((.((....))))))).)))................ (-24.06 = -23.58 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:11 2006