Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,664,658 – 8,664,759 |
Length | 101 |
Max. P | 0.932396 |
Location | 8,664,658 – 8,664,759 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 84.74 |
Mean single sequence MFE | -27.92 |
Consensus MFE | -22.88 |
Energy contribution | -23.27 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.10 |
Mean z-score | -2.88 |
Structure conservation index | 0.82 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.932396 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8664658 101 + 22224390 ----------AGACCCCUUUUUUUCUCUCGGUGCAGCCU---ACACAGCUGUACAGCUGCUGCAAUUUAACGGAAGUUGCAAUUUGCAUUUCAACUUGACCAAAAGCUGCGCCC ----------...................((((((((..---...(((((....))))).(((((..((((....))))....))))).................)))))))). ( -30.60) >DroSec_CAF1 101308 101 + 1 ----------GUACCCCCUCUUUUCUCUCAGUGCAGCCU---ACACAGCUGUACAGCUGCUGCAAUUUAACGGAAGUUGCAAUUUGCAUUUCAACUUGACCAAAAGCUGCGCCC ----------....................(((((((..---...(((((....))))).(((((..((((....))))....))))).................))))))).. ( -27.20) >DroSim_CAF1 65352 100 + 1 ----------AUACCC-AUUUUUUCUCUCGGUGCAGCCU---ACACAGCUGUACAGCUGCUGCAAUUUAACGGAAGUUGCAAUUUGCAUUUCAACUUGACCAAAAGCUGCGCCC ----------......-............((((((((..---...(((((....))))).(((((..((((....))))....))))).................)))))))). ( -30.60) >DroEre_CAF1 113287 89 + 1 ----------------------UUCUCCCUGUGCAGCCU---ACACAGCUGUACAGCUGCUGCAAUUUAACGGAAGUUGCAAUUUGCAUUUCAACUUGACCAAAAGCUGCGCCC ----------------------........(((((((..---...(((((....))))).(((((..((((....))))....))))).................))))))).. ( -27.00) >DroYak_CAF1 104779 104 + 1 ----------UUACCCCUUUUUUUCUCGCUGUGCAGCCUACUACACAGCUGUACAGCUGCUGCAAUUUAACGGAAGUUGCAAUUUGCAUUUCAACUUGACCAAAAGCUGCGCCC ----------......(((((..((..((((((((((..........))))))))))...(((((..((((....))))....))))).........))..)))))........ ( -27.60) >DroAna_CAF1 91258 111 + 1 CCACUGGGAAGAGCCCAUUCUUUUCGCCCAAUGCACCCU---CCAUGCCUGCCCAGCUGCAGCAAUUUAACGGAAGUUGCAAUUUGCAUUUCAACUUGACCAAAAGCUGCUCCC ...((((((((((......)))))).......(((..(.---....)..)))))))..(((((.....(((....)))((.....))..................))))).... ( -24.50) >consensus __________AUACCCCUUUUUUUCUCUCAGUGCAGCCU___ACACAGCUGUACAGCUGCUGCAAUUUAACGGAAGUUGCAAUUUGCAUUUCAACUUGACCAAAAGCUGCGCCC ..............................(((((((........(((((....)))))..((((..((((....))))....))))..................))))))).. (-22.88 = -23.27 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:10 2006