Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,661,412 – 8,661,502 |
Length | 90 |
Max. P | 0.757091 |
Location | 8,661,412 – 8,661,502 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 64.23 |
Mean single sequence MFE | -17.92 |
Consensus MFE | -11.48 |
Energy contribution | -11.84 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.27 |
Mean z-score | -1.30 |
Structure conservation index | 0.64 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757091 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8661412 90 + 22224390 -AAACUGCGAUGGCAACGCGUACGUGUUUAUAGCCACGAAAAGUUGCCAAACAAAACGGAGACCAGCGAAAAACUACGGCACCGAGAA---GUA----------- -..(((((..(((((((.....((((........))))....)))))))........(....)..))......((.((....)))).)---)).----------- ( -20.90) >DroGri_CAF1 120041 77 + 1 CGUACUCG-CUGGUAACGCGUACGUGUUUAUGGCCACGAAAAGUUGCCGAACAAAACGAUG-UAAGCAAAAAA-CAAAAA------------------------- .......(-((....((((((...(((((..(((.((.....)).))))))))..))).))-).)))......-......------------------------- ( -15.80) >DroWil_CAF1 135354 78 + 1 --------------GACGCGUACGUGUUUACGGCCACGAAAAGUUGCCGCACAAAACGAC--ACAGAGGAAAAAUAAAGAAAAAUGUGCUCGCA----------- --------------...((((.(((.....((((.((.....)).))))......)))))--...(((.(...((........)).).))))).----------- ( -15.80) >DroMoj_CAF1 121340 99 + 1 CAUACUGC-UUGGCAACGCGUACGUGUUUAUGGCCACGAAAAGUUGCCGAACAAAACGAUG-CAAGCAAAAAA-AAAGACAGGAAAAA---GUAAGAAUAAGUAA .....(((-(((.((...(((...(((((..(((.((.....)).))))))))..))).))-)))))).....-..............---.............. ( -20.00) >DroAna_CAF1 87337 90 + 1 -AAACGGCGAUGGCAACGCGUACGUGUUUAUGGCCACGAAAAGUUGCCAAACAAAACGGAGCAUAGGACAAAAAUACAGCAUACAGCA---CUA----------- -.....((..(((((((.....((((........))))....)))))))...........((................)).....)).---...----------- ( -17.09) >consensus _AAACUGC_AUGGCAACGCGUACGUGUUUAUGGCCACGAAAAGUUGCCGAACAAAACGAAG_AAAGCAAAAAA_UAAAGCA_AAAGAA___GUA___________ ..........(((((((.....((((........))))....)))))))........................................................ (-11.48 = -11.84 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:09 2006