Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,653,707 – 8,653,801 |
Length | 94 |
Max. P | 0.947548 |
Location | 8,653,707 – 8,653,801 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 82.24 |
Mean single sequence MFE | -38.27 |
Consensus MFE | -27.83 |
Energy contribution | -28.30 |
Covariance contribution | 0.47 |
Combinations/Pair | 1.15 |
Mean z-score | -3.68 |
Structure conservation index | 0.73 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.947548 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8653707 94 + 22224390 UAACUGCCACGCCCAC-ACUGCAGAAACA---GCACCGCCCACCUAAAUGGGGCGGCA-------G-UGGGGGUGGCAGGUCGAUGGCCACAACAAAAUCAACAAU ...(((((((.(((((-..(((.......---)))((((((.........))))))..-------)-)))).)))))))((.(((............))).))... ( -40.70) >DroPse_CAF1 119970 99 + 1 -AAGUGCCACGCCCACUGUCUCAGUAU--UUGGGAG----CGGCGAGAUGGGGUACAAGGUGUUGUUAGGGGUUAGGGGGUCGAUGGCCACAAUAGCAACAAAAAC -..(((((.(((.(.(((((((((...--)))))).----))).).).)).)))))....((((((((..(((((.........)))))....))))))))..... ( -27.80) >DroSec_CAF1 90847 94 + 1 UAACUGCCACGCCCAC-ACGGCAGAAACA---GCACCGCCCACCUAAAUGGGGCGGCA-------G-UGGGGGUGGCAGGUCGAUGGCCACAACAAAAUCAACAAU ...(((((((.(((((-...((.......---)).((((((.........))))))..-------)-)))).)))))))((.(((............))).))... ( -40.20) >DroSim_CAF1 54763 94 + 1 UAACUGCCACGCCCAC-ACGGCAGAAACA---GCACCGCCCACCUAAAUGGGGCGGCA-------G-UGGGGGUGGCAGGUCGAUGGCCACAACAAAAUCAACAAU ...(((((((.(((((-...((.......---)).((((((.........))))))..-------)-)))).)))))))((.(((............))).))... ( -40.20) >DroEre_CAF1 102830 94 + 1 UAACUGCCACGCCCAC-AUGGCAGAAACA---GCACCGCCCAUCUAAAUGGGGCGGCA-------G-UGGGGGUGGCAGGUCGAUGGCCACAACAAAAUCAACAGU ...(((((((.(((((-.((((.......---)).((((((.........))))))))-------)-)))).)))))))((.(((............))).))... ( -40.20) >DroYak_CAF1 93671 94 + 1 UAACUGCCACGCCCAC-ACGGCAGAAACA---GCACCGCCCACCUAAAUGGGGCGGCA-------G-UGGGGGUGGCAGGUCGAUGGCCACAACAAAAUCAGCAAU ...(((((((.(((((-...((.......---)).((((((.........))))))..-------)-)))).)))))))((.(((............))).))... ( -40.50) >consensus UAACUGCCACGCCCAC_ACGGCAGAAACA___GCACCGCCCACCUAAAUGGGGCGGCA_______G_UGGGGGUGGCAGGUCGAUGGCCACAACAAAAUCAACAAU ....((((((.(((......((..........)).((((((.........))))))............))).))))))(((.....)))................. (-27.83 = -28.30 + 0.47)
Location | 8,653,707 – 8,653,801 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 82.24 |
Mean single sequence MFE | -37.53 |
Consensus MFE | -23.72 |
Energy contribution | -25.30 |
Covariance contribution | 1.58 |
Combinations/Pair | 1.09 |
Mean z-score | -2.63 |
Structure conservation index | 0.63 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.809274 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8653707 94 - 22224390 AUUGUUGAUUUUGUUGUGGCCAUCGACCUGCCACCCCCA-C-------UGCCGCCCCAUUUAGGUGGGCGGUGC---UGUUUCUGCAGU-GUGGGCGUGGCAGUUA ...((((((...((....)).))))))(((((((.((((-(-------.((((((((......).)))))))((---(((....)))))-))))).)))))))... ( -45.30) >DroPse_CAF1 119970 99 - 1 GUUUUUGUUGCUAUUGUGGCCAUCGACCCCCUAACCCCUAACAACACCUUGUACCCCAUCUCGCCG----CUCCCAA--AUACUGAGACAGUGGGCGUGGCACUU- (((..(((..(....)..).))..))).............((((....))))..........((((----(.(((..--..((((...))))))).)))))....- ( -19.80) >DroSec_CAF1 90847 94 - 1 AUUGUUGAUUUUGUUGUGGCCAUCGACCUGCCACCCCCA-C-------UGCCGCCCCAUUUAGGUGGGCGGUGC---UGUUUCUGCCGU-GUGGGCGUGGCAGUUA ...((((((...((....)).))))))(((((((.((((-(-------.((((((((......).)))))))((---.......))...-))))).)))))))... ( -40.80) >DroSim_CAF1 54763 94 - 1 AUUGUUGAUUUUGUUGUGGCCAUCGACCUGCCACCCCCA-C-------UGCCGCCCCAUUUAGGUGGGCGGUGC---UGUUUCUGCCGU-GUGGGCGUGGCAGUUA ...((((((...((....)).))))))(((((((.((((-(-------.((((((((......).)))))))((---.......))...-))))).)))))))... ( -40.80) >DroEre_CAF1 102830 94 - 1 ACUGUUGAUUUUGUUGUGGCCAUCGACCUGCCACCCCCA-C-------UGCCGCCCCAUUUAGAUGGGCGGUGC---UGUUUCUGCCAU-GUGGGCGUGGCAGUUA ...((((((...((....)).))))))(((((((.((((-(-------.(((((((.........)))))))((---.......))...-))))).)))))))... ( -39.70) >DroYak_CAF1 93671 94 - 1 AUUGCUGAUUUUGUUGUGGCCAUCGACCUGCCACCCCCA-C-------UGCCGCCCCAUUUAGGUGGGCGGUGC---UGUUUCUGCCGU-GUGGGCGUGGCAGUUA ............((((.......))))(((((((.((((-(-------.((((((((......).)))))))((---.......))...-))))).)))))))... ( -38.80) >consensus AUUGUUGAUUUUGUUGUGGCCAUCGACCUGCCACCCCCA_C_______UGCCGCCCCAUUUAGGUGGGCGGUGC___UGUUUCUGCCGU_GUGGGCGUGGCAGUUA ............((((.......))))(((((((.(((...........(((((((.........)))))))......((....))......))).)))))))... (-23.72 = -25.30 + 1.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:08 2006