Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,649,582 – 8,649,681 |
Length | 99 |
Max. P | 0.991308 |
Location | 8,649,582 – 8,649,681 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 83.45 |
Mean single sequence MFE | -26.47 |
Consensus MFE | -21.09 |
Energy contribution | -21.49 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.24 |
Mean z-score | -2.71 |
Structure conservation index | 0.80 |
SVM decision value | 2.26 |
SVM RNA-class probability | 0.991308 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8649582 99 + 22224390 CAUCCUAGGGAUCGCAUUUCGCCGAUCCUUCAAGGGGUUGACUUCCUUUUAAGGACUUUC--GACCGCACUCGACCCUACUUUUCUUAUGUCUUUCUACCA ...((((((((((((.....).))))))))..)))((((((..((((....))))...))--))))......(((..............)))......... ( -23.94) >DroSec_CAF1 86762 99 + 1 CUAUCUAGGGAUCGCAUUUCUCCGAUCCUUCAGGAGGUUGACUUCCUUUCAAGGACUCUC--GACCGCAGUCGACCCAAUUUUUCUUAAGUCUUUGUAACA ......((((((((........)))))))).((((((....))))))..((((((((.((--(((....)))))..............))))))))..... ( -26.46) >DroSim_CAF1 50707 99 + 1 CCAUCUAGGGAUCGCAUUUCUCCGAUCCUUCAGGGGGUUGACUUCCUUUCAAGGACUCUC--GACCGCAGUCGACCCUACUUUUCUUAUGUCUUUGUAACA ....((((((((((........)))))))).))((((((((((((((....)))).....--......))))))))))....................... ( -27.80) >DroEre_CAF1 98694 98 + 1 C-AUCUAGGGAUCGCAUUUCCCCGAUCCUUCAAGGGGCUGGCUUCCAUUCAAGAUCUCUC--GACCGCAGUCAGCCCUACAUUUCUUAUGUUUUUCCACCU .-....((((((((........))))))))...((((((((((.(...((.((....)).--))..).))))))))))((((.....)))).......... ( -28.30) >DroYak_CAF1 89422 99 + 1 C-AUCUAGGGAUCGCAUUUC-CCGAUCCUUCAAGGGGUUGGCUGCCAUUCAAGGACUUCAAGCACCGCAGUCAGCCUAACUUUUCUUAUGUUUUCCUACCG .-....((((((((......-.))))))))....(((((((((((........(....).......)))))))))))........................ ( -25.86) >consensus C_AUCUAGGGAUCGCAUUUCUCCGAUCCUUCAAGGGGUUGACUUCCUUUCAAGGACUCUC__GACCGCAGUCGACCCUACUUUUCUUAUGUCUUUCUACCA ......((((((((........))))))))...(((((((((((((......))).............))))))))))....................... (-21.09 = -21.49 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:06 2006