Locus 326

Sequence ID X_DroMel_CAF1
Location 1,027,918 – 1,028,026
Length 108
Max. P 0.957121
window498

overview

Window 8

Location 1,027,918 – 1,028,026
Length 108
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 83.90
Mean single sequence MFE -23.21
Consensus MFE -15.47
Energy contribution -16.70
Covariance contribution 1.23
Combinations/Pair 1.07
Mean z-score -3.18
Structure conservation index 0.67
SVM decision value 1.47
SVM RNA-class probability 0.957121
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1027918 108 - 22224390
AAUUCUUUGUGACCCUCGGUCGCAUAUUUAUUACCUAAAUAUAUAACCGAAUAAUGCAGAAAUAGGAUACAGAUAUCAAUGAUUAUCACUGACAACGGUUAAAACAUU
........((((((...))))))(((((((.....))))))).((((((.....(((((.....(....).((((........)))).))).)).))))))....... ( -19.40)
>DroSec_CAF1 13402 96 - 1
AAUUCUUUGCGACCCUCGGUCGCAUAUUUAAUACUUAAAUA-AUAUCUGAAUAAUGCAUAAGUGGGAUACAUAUAUCAAUGAUUCCCAC-----------ACAACAUU
.((((..(((((((...)))))))((((((.....))))))-......)))).........((((((..(((......)))..))))))-----------........ ( -24.20)
>DroSim_CAF1 13009 107 - 1
AAUUCUUUGUGACCCUCGGUCGCAUAUUUAUUACUUAAAUA-AUAUAUGAAUAAUGCAUAAGUGGGAUACAUAUAUCAAUGAUUCCCACUGACAACGGUUAAAACAUG
.........(((((....(((((((((((((..........-....)))))).))))...(((((((..(((......)))..))))))))))...)))))....... ( -26.04)
>consensus
AAUUCUUUGUGACCCUCGGUCGCAUAUUUAUUACUUAAAUA_AUAUCUGAAUAAUGCAUAAGUGGGAUACAUAUAUCAAUGAUUCCCACUGACAACGGUUAAAACAUU
.((((..(((((((...)))))))((((((.....)))))).......))))........(((((((..(((......)))..))))))).................. (-15.47 = -16.70 +   1.23) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:50 2006