Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,027,918 – 1,028,026 |
Length | 108 |
Max. P | 0.957121 |
Location | 1,027,918 – 1,028,026 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 83.90 |
Mean single sequence MFE | -23.21 |
Consensus MFE | -15.47 |
Energy contribution | -16.70 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.07 |
Mean z-score | -3.18 |
Structure conservation index | 0.67 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.957121 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1027918 108 - 22224390 AAUUCUUUGUGACCCUCGGUCGCAUAUUUAUUACCUAAAUAUAUAACCGAAUAAUGCAGAAAUAGGAUACAGAUAUCAAUGAUUAUCACUGACAACGGUUAAAACAUU ........((((((...))))))(((((((.....))))))).((((((.....(((((.....(....).((((........)))).))).)).))))))....... ( -19.40) >DroSec_CAF1 13402 96 - 1 AAUUCUUUGCGACCCUCGGUCGCAUAUUUAAUACUUAAAUA-AUAUCUGAAUAAUGCAUAAGUGGGAUACAUAUAUCAAUGAUUCCCAC-----------ACAACAUU .((((..(((((((...)))))))((((((.....))))))-......)))).........((((((..(((......)))..))))))-----------........ ( -24.20) >DroSim_CAF1 13009 107 - 1 AAUUCUUUGUGACCCUCGGUCGCAUAUUUAUUACUUAAAUA-AUAUAUGAAUAAUGCAUAAGUGGGAUACAUAUAUCAAUGAUUCCCACUGACAACGGUUAAAACAUG .........(((((....(((((((((((((..........-....)))))).))))...(((((((..(((......)))..))))))))))...)))))....... ( -26.04) >consensus AAUUCUUUGUGACCCUCGGUCGCAUAUUUAUUACUUAAAUA_AUAUCUGAAUAAUGCAUAAGUGGGAUACAUAUAUCAAUGAUUCCCACUGACAACGGUUAAAACAUU .((((..(((((((...)))))))((((((.....)))))).......))))........(((((((..(((......)))..))))))).................. (-15.47 = -16.70 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:50 2006