Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,643,767 – 8,643,865 |
Length | 98 |
Max. P | 0.585125 |
Location | 8,643,767 – 8,643,865 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 89.06 |
Mean single sequence MFE | -29.15 |
Consensus MFE | -24.64 |
Energy contribution | -25.50 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.07 |
Mean z-score | -1.64 |
Structure conservation index | 0.85 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585125 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8643767 98 + 22224390 UG-GUGGAAAGUCAACUUUUGACAAGGCUUAUCAGUGGACCAGCAUCAGCAGCAGCUGAGGACACGCACCCAAAAAAAUAAAAAGGGGCGGC--GAUGGGU ..-((.(((((....))))).))...(((((((.(((..(((((..........)))).)..)))((.(((.............)))))...--))))))) ( -29.82) >DroSec_CAF1 81101 93 + 1 UG-GUGGAAAGUCAACUUUUGACAAGGCUUAUCAGUGGACCAGCAUCAGGAGCAGCUGAGGACACGCACCCAAAA-----AAAAGGGGCGGC--GAUGGGU ..-((.(((((....))))).))...(((((((.(((..(((((..........)))).)..)))((.(((....-----....)))))...--))))))) ( -31.00) >DroSim_CAF1 44703 94 + 1 UG-GUGGAAAGUCAACUUUUGACAAGGCUUAUCAGUGGACCAGCAUCAGGAGCAGCUGAGGACACGCACCCAAAAA----AAAAGGGGCGGC--GAUGGGU ..-((.(((((....))))).))...(((((((.(((..(((((..........)))).)..)))((.(((.....----....)))))...--))))))) ( -30.20) >DroEre_CAF1 92993 91 + 1 UG-GUGGGAAGUCAACUUUUGACAAGGCUUAUCAGUGGACCAGCAUCAGGAGCAGCUGAGGACACGCACCCAAA-------AAAGGGGCGGA--GAUGGGU ..-((.(((((....))))).))...(((((((.(((..(((((..........)))).)..)))((.(((...-------...)))))...--))))))) ( -30.70) >DroYak_CAF1 83423 91 + 1 UGGGUGGCAAGUCAACUUUUGACAAGGCUUAUCAGUGGACCAGCAUCGGGAGCAGCUGAGGACACGCACCCAAA--------AAGGGGCGGA--GAUGGGU ..........((((.....))))...(((((((.(((..(((((..(....)..)))).)..)))((.(((...--------..)))))...--))))))) ( -29.70) >DroAna_CAF1 70793 94 + 1 CG-GGAGGAAGUCAACUUUUGACAAGGCUUAUCAGUGGACCAGCAUCAGGAGCAGCUGAGGACACGCACCAGAAG------CGAGGGGAGGAGCGGGCGGA ..-.......(((..(((((..(...((((....(((..(((((..........)))).)..))).......)))------)...)..)))))..)))... ( -23.50) >consensus UG_GUGGAAAGUCAACUUUUGACAAGGCUUAUCAGUGGACCAGCAUCAGGAGCAGCUGAGGACACGCACCCAAAA______AAAGGGGCGGA__GAUGGGU ...((.(((((....))))).))...(((((((.(((..(((((..........)))).)..)))((.(((.............))))).....))))))) (-24.64 = -25.50 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:02 2006