Locus 3257

Sequence ID X_DroMel_CAF1
Location 8,643,020 – 8,643,118
Length 98
Max. P 0.790170
window5343

overview

Window 3

Location 8,643,020 – 8,643,118
Length 98
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 83.64
Mean single sequence MFE -24.66
Consensus MFE -16.69
Energy contribution -18.57
Covariance contribution 1.88
Combinations/Pair 1.08
Mean z-score -2.05
Structure conservation index 0.68
SVM decision value 0.58
SVM RNA-class probability 0.790170
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8643020 98 - 22224390
UUACAGCUUAUUAUAAAAUCAAUAUUUGGGAUUUUCCUCAAUGUUAGCCGCUUGUAGAAUAUGCCA--------------UUUUGUGCUACUGGAUGCGGCGUAAUUUAAUU
((((................((((((.(((.....))).)))))).(((((..((((.(((.....--------------...))).)))).....)))))))))....... ( -22.40)
>DroSec_CAF1 80407 98 - 1
UUACAGCUUAUUAUAAAAUCAAUAUUUGGGAUCUUCCUCAAUGUUAGCCGCUUGUAGAAAAUGCCA--------------UUUGAGGCUACUGGAUGCGGCGUAAUUUAAUU
((((................((((((.(((.....))).)))))).(((((.(.(((.....(((.--------------.....)))..))).).)))))))))....... ( -24.50)
>DroSim_CAF1 43962 98 - 1
UUACAGCUUAUUAUAAAAUCAAUAUUUGGGAUCUUCCUCAAUGUUAGCCGCUUGUAGAAUAUGCCA--------------UUUUGGGCUACUGAAAGCGGCGUAAUUUAAUU
((((................((((((.(((.....))).)))))).(((((((.(((.....(((.--------------.....)))..))).)))))))))))....... ( -26.40)
>DroEre_CAF1 92281 95 - 1
UUACUCCUUAUUAUAAAAUCAAUAUUUGGGAUCUUCGUCAAUGUUAGCCGCUUGUCGAA--UGCCA--------------UU-UGGGCUACUGGAAGCGGCGUAAUUUAAUU
((((((((...(((.......)))...))))...............(((((((.(((..--.(((.--------------..-..)))...))))))))))))))....... ( -22.70)
>DroYak_CAF1 82756 108 - 1
UUGCUGUUUAAUAUAAAAUCAAUAUUUGGGAUCUCUAACAUUG-AAGCCGCUUAUCGAA--UGCCAUUUGCCAUUUGCCAUU-UGGGCAACUGGAAGCGGCGUAAUUUAAUU
((((..............(((((..((((.....)))).))))-).(((((((..((((--(...)))))(((.(((((...-..))))).))))))))))))))....... ( -27.30)
>consensus
UUACAGCUUAUUAUAAAAUCAAUAUUUGGGAUCUUCCUCAAUGUUAGCCGCUUGUAGAA_AUGCCA______________UUUUGGGCUACUGGAAGCGGCGUAAUUUAAUU
((((................((((((.(((.....))).)))))).(((((((.(((.....(((....................)))..))).)))))))))))....... (-16.69 = -18.57 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:01 2006