Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,612,010 – 8,612,117 |
Length | 107 |
Max. P | 0.643737 |
Location | 8,612,010 – 8,612,117 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 70.24 |
Mean single sequence MFE | -18.19 |
Consensus MFE | -4.72 |
Energy contribution | -4.92 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.78 |
Structure conservation index | 0.26 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.643737 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8612010 107 + 22224390 ACAGCACUAAAUGUUUACUACGAACUAUGUAAUUGGAGUU-UCCCUAGUU---CACAAUCAUAUGAAAUCCUAUUACUUACGAUCGGUGGACUUCAAACAUUAAGUGCAUC ...(((((.(((((((((..........))))((((((((-..((...((---((........))))(((.((.....)).))).))..))))))))))))).)))))... ( -24.40) >DroSec_CAF1 49982 90 + 1 AGAACACUAAAUGUUUACU-----------------AGUU-UCCCUAGUU---CCCAAUCAUAUGAAAUCCUAUUACUCACGAUCGGUGGACUUCAAACAUUAAGUGCAUC ....((((.((((((((((-----------------((..-...))))).---...........(((.(((.................))).)))))))))).)))).... ( -16.43) >DroSim_CAF1 20767 90 + 1 ACAACACUUAAUGUUUACU-----------------AGUU-UCCCUAGUU---CACAAUCAUAUGAAAUCCUAUUACUCACGAUCGGUGGACUUCAAACAUUAAGUGCAUC ....(((((((((((((((-----------------((..-...))))).---...........(((.(((.................))).))))))))))))))).... ( -20.33) >DroEre_CAF1 62923 94 + 1 GCAGCAGUAAGCAUUUAGUACGAACCAUGUAAAGGG---------AAAUUU-------CCAUAUGAC-UACUAUUAAUUAAGAUCGGUGGACUUCAAACAUUAAGUGCAUC ..........(((((((((......(((((....((---------(....)-------))))))).(-(((((((......))).))))).........)))))))))... ( -16.50) >DroYak_CAF1 50555 111 + 1 GCGGCAGUAAACACUUACUACGAACUAUGCAAUAGGUUUUAUAUCAAAUUAUAUACAAUCAUAUUAUAUCCUAUUAAUUAAGAUCGGUGAACUUCAAACAUCAAGUGCAAC .((..(((((....))))).)).....(((((((((...((((.....................)))).))))))..........((((.........))))....))).. ( -13.30) >consensus ACAGCACUAAAUGUUUACUACGAAC_AUG_AA__GGAGUU_UCCCUAGUU___CACAAUCAUAUGAAAUCCUAUUACUUACGAUCGGUGGACUUCAAACAUUAAGUGCAUC .....................................................................................((((.((((........)))).)))) ( -4.72 = -4.92 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:54 2006