Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,611,609 – 8,611,708 |
Length | 99 |
Max. P | 0.541661 |
Location | 8,611,609 – 8,611,708 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 96.97 |
Mean single sequence MFE | -20.38 |
Consensus MFE | -19.62 |
Energy contribution | -18.75 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.19 |
Mean z-score | -1.48 |
Structure conservation index | 0.96 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541661 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8611609 99 - 22224390 CUUUUCUUUCGCCUCGCUGCGGCACCUUGCUCGCAUUUUCAUCAGGUUACUAGAGCUACAAAUUUUCCGUACCCUCCCUCAGUGGGUUUCCCAUUGUUU ...((((...((((...((((((.....)).))))........))))....))))........................(((((((...)))))))... ( -18.10) >DroSec_CAF1 49589 99 - 1 CUUUUCUUUCGCCUCGCUGCGGCACCUUGCUCGCAUUUUCAUCAGGUUACUAGAGCUACAAAUUUUCCGUACCCUCCUUCGGCGGGCUUCCCAUUGUUU ..........(((.(((((((((.....)).))).........(((.(((..(((........)))..))).))).....)))))))............ ( -20.70) >DroSim_CAF1 20376 99 - 1 CUUUUCUUUCGCCUCGCUGCGGCACCUUGCUCGCAUUUUCAUCAGGUUACUAGAGCUACAAAUUUUCCGUACCCUCCUUCGGCGGGCUUCCCAUUGUUU ..........(((.(((((((((.....)).))).........(((.(((..(((........)))..))).))).....)))))))............ ( -20.70) >DroEre_CAF1 62539 99 - 1 CUUUUCUUUCGCCUCGCUGCGGCACCUUGCUCGCAUUUUCAUCAGGUUACUGGAGCUACAAAUUUUCCGUACCCUCCCUCAGCGGGUUUCCCAUUGUUU ..........(((.(((((((((.....)).))).........(((.(((.((((.........))))))).))).....)))))))............ ( -22.00) >consensus CUUUUCUUUCGCCUCGCUGCGGCACCUUGCUCGCAUUUUCAUCAGGUUACUAGAGCUACAAAUUUUCCGUACCCUCCCUCAGCGGGCUUCCCAUUGUUU ..........(((.(((((((((.....)).))).........(((.(((.(((........)))...))).))).....)))))))............ (-19.62 = -18.75 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:53 2006