Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,606,890 – 8,606,985 |
Length | 95 |
Max. P | 0.707982 |
Location | 8,606,890 – 8,606,985 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 92.69 |
Mean single sequence MFE | -22.10 |
Consensus MFE | -17.56 |
Energy contribution | -18.64 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.07 |
Mean z-score | -1.60 |
Structure conservation index | 0.79 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707982 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8606890 95 - 22224390 AAAUCAAAGGCAGAGGAAAAUAUUUUUCUCAAAUUUAUUGCGGAAAAA-UGCUUUUCACGCCCAUUUGCUGUGCGCCAACAAAAUUGUUGCGCUGA ...(((..(((((((((((....))))))).........((((((((.-...))))).))).....))))..((((.((((....))))))))))) ( -24.50) >DroSec_CAF1 44975 96 - 1 AAAUCAAAGGCAGAGGAAAAUAUUUUUCUCAAAUUUAUUGCGGAAAAAGAGCUUUUCACGCCCAUUUGCUGUGCGCCAACAAAAUUGUUGCGCUGA ...(((..(((((((((((....))))))).........((((((((.....))))).))).....))))..((((.((((....))))))))))) ( -24.50) >DroSim_CAF1 15754 96 - 1 AAAUCAAAGGCAGAGGAAAAUAUUUUUCUCAAAUUUAUUGCGGAAAAAGAGCUUUUCACGCCCAUUUGCUGUGCGCCAACAAAAUUGUUGCGCUGA ...(((..(((((((((((....))))))).........((((((((.....))))).))).....))))..((((.((((....))))))))))) ( -24.50) >DroEre_CAF1 55824 92 - 1 ---UCAAAGGCAGAAGAAAAUAUUUUCCCCAAAUUUAUUGCGCAAAAA-UGCUUUUCACGCCCAUUUGCGGUGAGCUAACAAAAUUGUUGCGUUGA ---.....((..(((((.....))))).)).........((((.....-.((((....(((......)))..)))).((((....))))))))... ( -15.70) >DroYak_CAF1 45270 95 - 1 AAAUCAAAGGCAGAGGAAAAUAUUUUUCUCAAAUUUAUUGCGGAAAAG-CGCUUUUCACGCCCAUUUGCUGUGAGCUAACAAAAUUGCUGCGCUGA ...(((..(((((((((((....))))))).........((((((((.-...))))).))).....))))((((((..........))).)))))) ( -21.30) >consensus AAAUCAAAGGCAGAGGAAAAUAUUUUUCUCAAAUUUAUUGCGGAAAAA_AGCUUUUCACGCCCAUUUGCUGUGCGCCAACAAAAUUGUUGCGCUGA ...(((..(((((((((((....))))))).........((((((((.....))))).))).....))))..((((.((((....))))))))))) (-17.56 = -18.64 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:52 2006