Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,024,812 – 1,024,918 |
Length | 106 |
Max. P | 0.933658 |
Location | 1,024,812 – 1,024,918 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.95 |
Mean single sequence MFE | -36.10 |
Consensus MFE | -13.89 |
Energy contribution | -17.34 |
Covariance contribution | 3.45 |
Combinations/Pair | 1.14 |
Mean z-score | -2.24 |
Structure conservation index | 0.38 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.933658 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1024812 106 + 22224390 GCACUAAUUUAUCAGGUUUGUGGUC-------CAGUACUCAGGCCUCAAUCUUUUGUUCGAAGGCAAGGAG-----CUUGGGGCUUUAGGUCGAGUUCUGGAUACCGGACAAG-GGACA- ...............((((.(.(((-------(.(((..(((..(((.((((...((((..((((.....)-----))).))))...)))).)))..)))..))).)))).).-)))).- ( -34.60) >DroSec_CAF1 10341 111 + 1 GCACUAAUUUAUCAGGUUUGUGGUC-------CAGAACUCAGGCCUCAAUCUUUUGUUCAAAGGCAAGGAGUCGCACUUGGGGCUUUAGGUCGAGUUCUGGAUAACGGACAAG-GGACA- ...........((..((((((.(((-------((((((((.(((((.......((((......))))((((((.(....).)))))))))))))))))))))).))))))...-))...- ( -39.90) >DroSim_CAF1 9908 111 + 1 GCACUAAUUUAUCAGGUUUGUGGUC-------CAGAACUCAGGCCUCAAUCUUUUGUUCAAAGGCAAGGAGUCGCACUUGGGGCUUUAGGUCGAGUUCUGGAUACCGGACAAG-GGACA- ...........((..(((((..(((-------((((((((.(((((.......((((......))))((((((.(....).))))))))))))))))))))))..)))))...-))...- ( -38.50) >DroYak_CAF1 10692 118 + 1 GCACUAAUUUAUCAGGUUUGUGGUCCCGAAUCCAGAACUCAGGCCUCAAUCUUUUGUUCGAAGGAAAGGAGUCGCAUUUGGGGCUUCAGGUCGAGUUCUGGUUACCGGACAAU-GGACA- ...............(((..(.((((.(...(((((((((.(((((...((((((....))))))..((((((.(....).))))))))))))))))))))...).)))).).-.))).- ( -45.80) >DroAna_CAF1 15254 86 + 1 GCACGAAUUUAUCUGUUUUGUG--------------ACUCAUGUUCAUGUCUUUUGUUCGAU--------------UUUGGG------GGUAAACCUCUGCAUAACGGACAGUCAGACAG .((((((.........))))))--------------...........(((((.(((((((..--------------...(((------((....)))))......)))))))..))))). ( -21.70) >consensus GCACUAAUUUAUCAGGUUUGUGGUC_______CAGAACUCAGGCCUCAAUCUUUUGUUCGAAGGCAAGGAGUCGCACUUGGGGCUUUAGGUCGAGUUCUGGAUACCGGACAAG_GGACA_ .(((.((((.....)))).)))(((.......((((((((.(((((....(((((....)))))...((((((.(....).))))))))))))))))))).......))).......... (-13.89 = -17.34 + 3.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:49 2006