Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,594,108 – 8,594,223 |
Length | 115 |
Max. P | 0.500000 |
Location | 8,594,108 – 8,594,223 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 70.17 |
Mean single sequence MFE | -28.78 |
Consensus MFE | -5.75 |
Energy contribution | -8.97 |
Covariance contribution | 3.22 |
Combinations/Pair | 1.23 |
Mean z-score | -1.68 |
Structure conservation index | 0.20 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8594108 115 + 22224390 CUCAGCAGCUUCCAUUCAAAUGCAUCUCGGUAUUUGG----CCA-UUGUUUUCACUAAAUAGAGACUUAAUGGGAUUUAUUUAUCAAUAAAUUAUGGAAAUUUAAGGGGCUGGCUGGGAC ((((((((((((...((((((((......))))))))----(((-(.((((....((((((((..((....))..)))))))).....)))).))))........)))))).)))))).. ( -34.30) >DroSec_CAF1 34327 115 + 1 CUGAGCAGCUUCCAUUCAAAAGCAUCUCGGUAUUUGG----CCA-UUGUUUUCCCUAAAUAGAGACUUAAUGGGAUUUAUUUAUCAAUAAAUUAUGGAAAUUUUAGGGGCUGGCUGGGAC ((.(((((((((...(((((.((......)).)))))----(((-(.((((....((((((((..((....))..)))))))).....)))).))))........)))))).))).)).. ( -27.30) >DroEre_CAF1 45195 115 + 1 CAGAGCAGCUGGCAUGGCAAAGCUGCUCGGUAGUUGG----CCA-UUGUUUUCCCUAAAUAGAGGCUUAAUCGGAUGUAUUUAUAAAUUAAUUAUGGAAAUUUAAAGGGCUGGCUGGGAC ..((((((((.((...))..))))))))..((((..(----((.-....(((((.((((((((.((..........)).))))).......))).))))).......)))..)))).... ( -32.01) >DroYak_CAF1 34744 119 + 1 CCAAGCAGCUUACAUUCAAAAGCCUUUCGGUAUUUGGCUCGCCA-UUGUUCUGCCUAAAUAGACACUUAAUGGGAUUUAUUUAUCAAUAAAUUAUGGAAAUUUAAAGUGCUGCCUUCGAC ....(((((.......((((.(((....))).))))(((..(((-(((.((((......))))....))))))((((((((....))))))))............))))))))....... ( -23.00) >DroAna_CAF1 25464 91 + 1 CGGA-CAGUUUACAUGCGACAGCCCUUGGCUGUCUGC----UAAGUAGUGCUCCUUAAA----CGCUUAAACCCAUU----UCACA----------GCAGCUUUAAAGGCUGCC------ .(((-((..((((..(((((((((...))))))).))----...)))))).))).....----..............----.....----------((((((.....)))))).------ ( -27.30) >consensus CUGAGCAGCUUACAUUCAAAAGCAUCUCGGUAUUUGG____CCA_UUGUUUUCCCUAAAUAGAGACUUAAUGGGAUUUAUUUAUCAAUAAAUUAUGGAAAUUUAAAGGGCUGGCUGGGAC .....((((((....(((((.(((....))).)))))....(((...........((((((((..(......)..))))))))...........))).........))))))........ ( -5.75 = -8.97 + 3.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:49 2006