Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,567,289 – 8,567,407 |
Length | 118 |
Max. P | 0.547403 |
Location | 8,567,289 – 8,567,407 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.07 |
Mean single sequence MFE | -28.78 |
Consensus MFE | -22.12 |
Energy contribution | -22.40 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.04 |
Mean z-score | -1.50 |
Structure conservation index | 0.77 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547403 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8567289 118 - 22224390 UCAUCAAAAUGGUGUCAUAUGUUUUUAAUCGGGGAAAACAAGGACCAGCAGGCAAACAAA-AAAGAAAAAAAAAAAAGAGAUACGGGGAGUGUUUGCCCGGUUG-UCUGUCGCCUGCGGU .((((.....)))).....(((((((.......)))))))...(((.((((((...(...-...).............((((((.(((........))).).))-)))...))))))))) ( -28.50) >DroSec_CAF1 1461 110 - 1 UCAUCAAAAUGGUGUCAUAUGUUUUUAAUCGGGGAAAACAAGGACCAGCAGGCAAACAAA-AAAAA--------GAAAAGAUACGGGGAGUGUUUGCCCGGUUG-UCUGUCGCCUGCGGU .((((.....)))).....(((((((.......)))))))...(((.((((((...(...-.....--------)...((((((.(((........))).).))-)))...))))))))) ( -28.20) >DroSim_CAF1 1433 110 - 1 UCAUCAAAAUGGUGUCAUAUGUUUUUAAUCGGGGAAAACAAGGACCAGCAGGCAAACAAA-AAAUA--------GAAAAGAUACGGGGAGUGUUUGCCCGGUUG-UCUGUCGCCUGCGGU .((((.....)))).....(((((((.......)))))))...(((.((((((...(...-.....--------)...((((((.(((........))).).))-)))...))))))))) ( -28.20) >DroEre_CAF1 18219 104 - 1 UCAUCAAAAUGGUGUCAUAUGUUUUUAAUAGCAGAAAACAAGGACCA-CAGGCAAACAA------A--------AAAAAGACACGGGAAAUGUUUUCCCGGUUA-UUUGCCGCCUGCGGU .((((.....)))).....(((((((.......)))))))...(((.-(((((......------.--------..........(((((.....)))))(((..-...)))))))).))) ( -29.10) >DroYak_CAF1 1407 112 - 1 UCAUCAAAAUGGUGUCAUAUGUUUUUAAUCGGGGAAAACAAGGACCAGCAGGCAAACAAUGAAACA--------UAAAAGAUACGGGGAAUGUUUUCCCGCUUCCUCUGUCGCCUGCGGU .((((.....)))).....(((((((.......)))))))...(((.((((((.....(((...))--------)....((((.((((((.((......))))))))))))))))))))) ( -29.90) >consensus UCAUCAAAAUGGUGUCAUAUGUUUUUAAUCGGGGAAAACAAGGACCAGCAGGCAAACAAA_AAA_A________AAAAAGAUACGGGGAGUGUUUGCCCGGUUG_UCUGUCGCCUGCGGU .((((.....)))).....(((((((.......)))))))...(((.((((((...............................(((.........)))(((......)))))))))))) (-22.12 = -22.40 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:41 2006