Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,554,359 – 8,554,464 |
Length | 105 |
Max. P | 0.736722 |
Location | 8,554,359 – 8,554,464 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 89.09 |
Mean single sequence MFE | -20.57 |
Consensus MFE | -16.70 |
Energy contribution | -16.95 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.67 |
Structure conservation index | 0.81 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.736722 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8554359 105 - 22224390 GUAUGU-AUAUGCGGUGCAAGAACCGCAGCAA---CAACAAUAAUCGUGGGCUUGAAAACUGCCAGCGUGCAAAACACCAAAAAGAAUUUAACUAAAUCAACCUAA----UUC ((((((-...((((((......))))))....---..............(((.........))).))))))...................................----... ( -20.40) >DroSec_CAF1 15100 108 - 1 GUAUGU-UUAUGCGGUGCAAGAACCGCAACAACAACAACAAUAAUCGGGGGCUUGAAAACUGCCAGCGUGCAAAACACCAAAAAGAAUUUAACUAAAUCAACCUAA----UUC ((.(((-(..((((((......))))))..))))))......(((..(((((.........))).(.(((.....))))......................))..)----)). ( -20.80) >DroSim_CAF1 22313 108 - 1 GCAUGU-UUAUGCGGUGCAAGAACCGCAACAACAACAACAAUAAUCGGGGGCUUGAAAACUGCCAGCGUGCAAAACACCAAAAAGAAUUUAACUAAAUCAACCUAA----UUC ((((((-(..((((((......)))))).....................(((.........))))))))))...................................----... ( -22.40) >DroEre_CAF1 15867 104 - 1 ------UAUAUGCGGUGCAAGAACCGCAACAA---CAACAAACAUCGGGGGCUUGAAAACUGCCAGCGUGCAAAACACCACAAAGAAUUGAACUAAAUCAACCUAAUUAAUUA ------....((((((......))))))....---...........((((((.........)))...(((........)))......((((......)))))))......... ( -18.70) >consensus GUAUGU_AUAUGCGGUGCAAGAACCGCAACAA___CAACAAUAAUCGGGGGCUUGAAAACUGCCAGCGUGCAAAACACCAAAAAGAAUUUAACUAAAUCAACCUAA____UUC ..........((((((......))))))..................((((((.........))).(.(((.....))))......................)))......... (-16.70 = -16.95 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:35 2006