Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,553,261 – 8,553,373 |
Length | 112 |
Max. P | 0.964075 |
Location | 8,553,261 – 8,553,373 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 92.35 |
Mean single sequence MFE | -25.60 |
Consensus MFE | -23.62 |
Energy contribution | -23.62 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.63 |
Structure conservation index | 0.92 |
SVM decision value | 1.56 |
SVM RNA-class probability | 0.964075 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8553261 112 + 22224390 AUCGCAUAAUUCAAAAUUCAUUUCGAAGGCGCACAAAAGGCGCCCAUGGAAUUAAAAUGGAAAUGGAAUUGGAAUUGGAAUCCAAGCCA-----GCGACCACAUAAUAAUACAUAUU .((((...........((((((((...(((((.......)))))(((.........)))))))))))..(((..((((...)))).)))-----))))................... ( -26.50) >DroSec_CAF1 13952 106 + 1 AUCGCAUAAUUCAAAAUUCAUUUCGAAGGCGCACAAAAGGCGCCCAUGGAAUUAAAAUGGAAAUGGAAU------UGGAAUCCAAGCCA-----GCGACCACAUAAUAAUACAUAUU .((((.((((((....(((.....)))(((((.......)))))....))))))...(((...((((..------.....))))..)))-----))))................... ( -25.20) >DroEre_CAF1 14737 111 + 1 AUCGCAUAAUUCAAAAUUCACUUGGAAGGCGCACAAAAGGCGCCCAUGGAAUUAAAAUGGAAAUGGAAU------UGGAAUCCAAGCCAGCGCAGCGACCACAUAAUAAUACAUAUU .((((.((((((....(((.....)))(((((.......)))))....))))))...(((...((((..------.....))))..))).....))))................... ( -25.10) >consensus AUCGCAUAAUUCAAAAUUCAUUUCGAAGGCGCACAAAAGGCGCCCAUGGAAUUAAAAUGGAAAUGGAAU______UGGAAUCCAAGCCA_____GCGACCACAUAAUAAUACAUAUU .((((.((((((....(((.....)))(((((.......)))))....))))))...(((...((((.............))))..))).....))))................... (-23.62 = -23.62 + -0.00)
Location | 8,553,261 – 8,553,373 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 92.35 |
Mean single sequence MFE | -26.60 |
Consensus MFE | -23.65 |
Energy contribution | -23.65 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.76 |
Structure conservation index | 0.89 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593167 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8553261 112 - 22224390 AAUAUGUAUUAUUAUGUGGUCGC-----UGGCUUGGAUUCCAAUUCCAAUUCCAUUUCCAUUUUAAUUCCAUGGGCGCCUUUUGUGCGCCUUCGAAAUGAAUUUUGAAUUAUGCGAU ..((((((....))))))(((((-----(((.(((((.......)))))..))).(((...((((.(((...(((((((....).))))))..))).))))....)))....))))) ( -27.40) >DroSec_CAF1 13952 106 - 1 AAUAUGUAUUAUUAUGUGGUCGC-----UGGCUUGGAUUCCA------AUUCCAUUUCCAUUUUAAUUCCAUGGGCGCCUUUUGUGCGCCUUCGAAAUGAAUUUUGAAUUAUGCGAU ..((((((....))))))(((((-----(((..((((.....------..))))...))).((((.(((...(((((((....).))))))..))).))))...........))))) ( -26.60) >DroEre_CAF1 14737 111 - 1 AAUAUGUAUUAUUAUGUGGUCGCUGCGCUGGCUUGGAUUCCA------AUUCCAUUUCCAUUUUAAUUCCAUGGGCGCCUUUUGUGCGCCUUCCAAGUGAAUUUUGAAUUAUGCGAU ....(((((.(((......(((((....(((..((((.....------..))))...)))............(((((((....).))))))....)))))......))).))))).. ( -25.80) >consensus AAUAUGUAUUAUUAUGUGGUCGC_____UGGCUUGGAUUCCA______AUUCCAUUUCCAUUUUAAUUCCAUGGGCGCCUUUUGUGCGCCUUCGAAAUGAAUUUUGAAUUAUGCGAU ..((((((....))))))(((((.....(((..((((.............))))...)))((..(((((...(((((((....).)))))).......)))))..)).....))))) (-23.65 = -23.65 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:34 2006