Locus 3232

Sequence ID X_DroMel_CAF1
Location 8,549,711 – 8,549,822
Length 111
Max. P 0.500000
window5307

overview

Window 7

Location 8,549,711 – 8,549,822
Length 111
Sequences 3
Columns 112
Reading direction forward
Mean pairwise identity 85.05
Mean single sequence MFE -12.93
Consensus MFE -9.59
Energy contribution -10.20
Covariance contribution 0.61
Combinations/Pair 1.06
Mean z-score -1.71
Structure conservation index 0.74
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8549711 111 + 22224390
GCCAUCAAAAACCCAUCAAAACCCA-UCAAAACACAAAUAAAUCAGCAAAUAAAAAGCUAGCAAACUGAAAAGUUAAUUCAUGAAUCAAAGAACAUUCGCAGGGCCUUGAAC
...............((((..(((.-..................(((.........))).((.((((....)))).......((((........)))))).)))..)))).. ( -15.60)
>DroSec_CAF1 10586 97 + 1
GCCAUCAAAAACAAAUCAAAACCCAAUCAAC--A------------CAAAUAAAAAGCCAGCUAGCU-AAAAGUUAAUUCAUGAAUCAAAGAGCAUUCGCUGGGCCUUGAAC
...............((((..(((.......--.------------.........(((......)))-.......................(((....))))))..)))).. ( -11.60)
>DroSim_CAF1 16837 97 + 1
GCCAUCAAAAACAAAUCAAAACCCAAUCAAC--A------------CAAAUAAAAAGCCAGCUAGCU-AAAAGUUAAUUCAUGAAUCAAAGAGCAUUCGCUGGGCCUUGAAC
...............((((..(((.......--.------------.........(((......)))-.......................(((....))))))..)))).. ( -11.60)
>consensus
GCCAUCAAAAACAAAUCAAAACCCAAUCAAC__A____________CAAAUAAAAAGCCAGCUAGCU_AAAAGUUAAUUCAUGAAUCAAAGAGCAUUCGCUGGGCCUUGAAC
...............((((..(((......................................(((((....)))))......((((........))))...)))..)))).. ( -9.59 = -10.20 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:28 2006