Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,548,373 – 8,548,533 |
Length | 160 |
Max. P | 0.928588 |
Location | 8,548,373 – 8,548,493 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.50 |
Mean single sequence MFE | -32.28 |
Consensus MFE | -24.50 |
Energy contribution | -25.26 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.13 |
Mean z-score | -2.30 |
Structure conservation index | 0.76 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928588 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8548373 120 - 22224390 CGCUGUUCAUUGUCUCGAGUCGAAAAACUUGGGAUAAAAGGAGACGAACAUUUCUGGGUGAUGGUGAGCGGGCAAAAGAGUCCAGAGAUUCAAAUGGAAAACUGGGAAAGCGGGGAUUUC ((((((((.(((((((((((......)))))))))))..(....))))))(((((.(((..........((((......)))).....(((.....))).))).))))))))........ ( -35.10) >DroSec_CAF1 9304 114 - 1 ------UCAUUGUCUCGAGUCGAAAAACUUGGGAUAAAAGGAGAAAAAGAUUUCUGGGAGAUGGUGAGCGGGCAAAAGAAUCCAGAGAUUCAAAUGGAAAACCGGGAAAGCGGAGAUUUC ------...(((((((((((......))))))))))).....((((..((((((((((...(..((......))..)...))))))))))...........(((......)))...)))) ( -26.20) >DroSim_CAF1 12163 120 - 1 CGCUGUUCAUUGUCUCGAGUCGAAAAACUUGGGAUAAAAGGAGAACAGGAUUUCUGGGAGAUGGUGAGCGGGCAAAAGAAUCCACAGAUUCAAAUGGGAAACUGGGAAAGCGGAGAUUUC ((((((((((..((((((((......)))).........(((((......)))))..))))..))))))...........(((.(((.(((......))).)))))).))))........ ( -33.20) >DroEre_CAF1 9849 120 - 1 CGCUGUUCAUUGUCUCGAGUCGAAAAACUUGGGAUAAAAGGAGCAGAACAUUUCUGGGAGAUGGUGAGCAGGCAAAAGAAUCCAGAGAUUCAAAUGGAAAACUGGGAGUGCAGGGAUUUG .(((((((((..((((((((......)))).............((((.....)))).))))..))))))).))....((((((.....(((.....)))..(((......))))))))). ( -33.30) >DroYak_CAF1 10956 120 - 1 CGCUGUUCAUUGUCUCGAGUCGAAAAACUUGGGAUAAAAGGAGAGGAAAAUUUCUGGAAGAUGGUGAGCAGGCAAAAGAAUGCCGCGCUUCAAAUGGAAAACUGGAAAAGCGGGGAUUUC .(((((((((((((((((((......))))))))))...(((((......)))))........))))))).))....((((.((.(((((....(((....)))...))))))).)))). ( -33.60) >consensus CGCUGUUCAUUGUCUCGAGUCGAAAAACUUGGGAUAAAAGGAGAAGAACAUUUCUGGGAGAUGGUGAGCGGGCAAAAGAAUCCAGAGAUUCAAAUGGAAAACUGGGAAAGCGGGGAUUUC ..((((((((((((((((((......))))))))))...(((((......)))))........))))))))......(((((....)))))..........(((......)))....... (-24.50 = -25.26 + 0.76)
Location | 8,548,413 – 8,548,533 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.00 |
Mean single sequence MFE | -30.24 |
Consensus MFE | -24.14 |
Energy contribution | -24.42 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.04 |
Mean z-score | -1.62 |
Structure conservation index | 0.80 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755508 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8548413 120 - 22224390 UUUAUGGUCUCAACUCGCGGUAAACAAUGAAAAAUUCUGUCGCUGUUCAUUGUCUCGAGUCGAAAAACUUGGGAUAAAAGGAGACGAACAUUUCUGGGUGAUGGUGAGCGGGCAAAAGAG ......((((...(((((.((...(...((((..(((.(((.((.....(((((((((((......)))))))))))..)).))))))..))))..)...)).))))).))))....... ( -31.70) >DroSec_CAF1 9344 109 - 1 UUUAUGGUCUCAACUCGCGGUAAACAAUGAAAAAU-----------UCAUUGUCUCGAGUCGAAAAACUUGGGAUAAAAGGAGAAAAAGAUUUCUGGGAGAUGGUGAGCGGGCAAAAGAA ......((((...(((((.((...(..........-----------...(((((((((((......)))))))))))..(((((......))))).)...)).))))).))))....... ( -25.30) >DroSim_CAF1 12203 120 - 1 UUUAUGGUCUCAACUCGCGGUAAACAAUGAAAAAUUCUGUCGCUGUUCAUUGUCUCGAGUCGAAAAACUUGGGAUAAAAGGAGAACAGGAUUUCUGGGAGAUGGUGAGCGGGCAAAAGAA ......((((...(((((.((...(...(((..(((((((..((.((..(((((((((((......))))))))))).)).)).))))))))))..)...)).))))).))))....... ( -32.20) >DroEre_CAF1 9889 120 - 1 UUUAUGGUCUCAACUCGCGGUAAACAAUGAAAAAUUCUGUCGCUGUUCAUUGUCUCGAGUCGAAAAACUUGGGAUAAAAGGAGCAGAACAUUUCUGGGAGAUGGUGAGCAGGCAAAAGAA ......((((...(((((.((...(...((((.....(((..((((((.(((((((((((......)))))))))))...)))))).)))))))..)...)).))))).))))....... ( -33.80) >DroYak_CAF1 10996 120 - 1 UUUAUGGUCCCAACUCGCGGUAAACAAUGAAAAAUUCUGUCGCUGUUCAUUGUCUCGAGUCGAAAAACUUGGGAUAAAAGGAGAGGAAAAUUUCUGGAAGAUGGUGAGCAGGCAAAAGAA .........((..(((((.((...(...((((..((((.((.((.....(((((((((((......))))))))))).)))).))))...))))..)...)).)))))..))........ ( -28.20) >consensus UUUAUGGUCUCAACUCGCGGUAAACAAUGAAAAAUUCUGUCGCUGUUCAUUGUCUCGAGUCGAAAAACUUGGGAUAAAAGGAGAAGAACAUUUCUGGGAGAUGGUGAGCGGGCAAAAGAA ......((((...(((((.((...(........................(((((((((((......)))))))))))..(((((......))))).)...)).))))).))))....... (-24.14 = -24.42 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:27 2006