| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,542,912 – 8,543,009 |
| Length | 97 |
| Max. P | 0.823931 |
| Location | 8,542,912 – 8,543,009 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.00 |
| Mean single sequence MFE | -25.27 |
| Consensus MFE | -18.94 |
| Energy contribution | -18.98 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.823931 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8542912 97 + 22224390 GA-GGGGGCGUCGAAAGG------GGGGCGUGGUCCGGGCACCUCAGCUGCAAAAG--AGGGCGAAAAA----AAAAUA-AUGC---------AGAAAAACAUGAGAAAAUAUUUCUCAU ((-((..((.((....))------.((((...))))..)).))))..(((((....--...........----......-.)))---------))......(((((((.....))))))) ( -23.95) >DroSec_CAF1 7101 94 + 1 GA-GGGGGCGGCGAAAGG------GGGGCGUGGUCCGGGCACCUCAGCUGCAAAAG--AGGGCGAAA------AAAGAA-AUGC---------A-AAAAACAUGAGAAAAUAUUUCUCAU ..-..((((.(((.....------....))).))))..((.((((..........)--)))))....------......-....---------.-......(((((((.....))))))) ( -22.70) >DroSim_CAF1 9641 100 + 1 GA-GGGGGCGGCGAAAGG------GGGGCGUGGUCCGGGCACCUCAGCUGCAAAAG--AGGGCGAAAAAUAAAAAAGAA-AUGC---------A-AAAAACAUGAGAAAAUAUUUCUCAU ..-..((((.(((.....------....))).))))..((.((((..........)--)))))................-....---------.-......(((((((.....))))))) ( -22.70) >DroEre_CAF1 7084 92 + 1 GA--GGGGCGGCGAAAGG------GGGGCGUGGUCCAGGCACCUCAGCUGCAAAAACCCGAGCGAAAAA----AG------UGC---------A-AAAAACAUGAGAAAAUAUUUCUCAU ..--((((((((.....(------(((((.((...)).)).)))).))))).....)))..(((.....----..------)))---------.-......(((((((.....))))))) ( -26.80) >DroYak_CAF1 8220 113 + 1 GACGGGGGCGGCGAAAGGGGCUGGGGGGCGUGGUCCGGGCACCUCAGCUGCAAAAG--CGGGCGAAAAA----UAUAUAUAUGCAAAAAAAAAA-AAAAACAUGAGAAAAUAUUUCUCAU ......(.(.((....(.((((((((.((.((...)).)).)))))))).)....)--).).)......----.....................-......(((((((.....))))))) ( -30.20) >consensus GA_GGGGGCGGCGAAAGG______GGGGCGUGGUCCGGGCACCUCAGCUGCAAAAG__AGGGCGAAAAA____AAAAAA_AUGC_________A_AAAAACAUGAGAAAAUAUUUCUCAU ...((((((..(....)........((((...))))..)).)))).(((...........)))......................................(((((((.....))))))) (-18.94 = -18.98 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:17 2006