Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,542,287 – 8,542,398 |
Length | 111 |
Max. P | 0.988221 |
Location | 8,542,287 – 8,542,398 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.46 |
Mean single sequence MFE | -18.96 |
Consensus MFE | -18.40 |
Energy contribution | -18.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 0.97 |
SVM decision value | 2.11 |
SVM RNA-class probability | 0.988221 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8542287 111 - 22224390 UUGCUUUUUUCGCCAGCAUUGACAAAUCAUAAUUAAAAAUUCCAAUUAACUAGCGUCUUUGGCGGCGAAGAAACCAACU--------GAAUAAAACCACCCAAAAUCCUGUCGAA-ACCA (((.((((((((((.((...(((......(((((.........)))))......)))....)))))))))))).)))..--------............................-.... ( -18.40) >DroSec_CAF1 6488 111 - 1 UUGCUUUUUUCGCCAGCAUUGACAAAUCAUAAUUAAAAAUUCCAAUUAACUAGCGUCUUUGGCGGCGAAGAAACCAACU--------GAAUAAAACCACCCAAAAUCCUGUCGAA-ACCA (((.((((((((((.((...(((......(((((.........)))))......)))....)))))))))))).)))..--------............................-.... ( -18.40) >DroSim_CAF1 9055 111 - 1 UUGCUUUUUUCGCCAGCAUUGACAAAUCAUAAUUAAAAAUUCCAAUUAACUAGCGUCUUUGGCGGCGAAGAAACCAACU--------GAAUAAAACCACCCAAAAUCCUGUCGAA-ACCA (((.((((((((((.((...(((......(((((.........)))))......)))....)))))))))))).)))..--------............................-.... ( -18.40) >DroEre_CAF1 6502 120 - 1 UUGCUUUUUUCGCCAGCAUUGACAAAUCAUAAUUAAAAAUUCCAAUUAACUAGCGUCUUUGGCGGCGAAGAAACCAACCGAACAACAGAAUAAAACCACCCAAAAUCCAGUCGAAAACCA (((.((((((((((.((...(((......(((((.........)))))......)))....)))))))))))).)))........................................... ( -18.40) >DroYak_CAF1 7630 120 - 1 UUGCUUUUUUCGCCAGCAUUGACAAAUCAUAAUUAAAAAUUCCAAUUAACUAGCGUCUUUGGCGGCGAAGAAACCAACCGAACAACGGAAUAAAACCACCCAAAAUCCUGUCGAAAACCA (((.((((((((((.((...(((......(((((.........)))))......)))....)))))))))))).)))(((.....)))................................ ( -21.20) >consensus UUGCUUUUUUCGCCAGCAUUGACAAAUCAUAAUUAAAAAUUCCAAUUAACUAGCGUCUUUGGCGGCGAAGAAACCAACU________GAAUAAAACCACCCAAAAUCCUGUCGAA_ACCA (((.((((((((((.((...(((......(((((.........)))))......)))....)))))))))))).)))........................................... (-18.40 = -18.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:16 2006