Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,537,528 – 8,537,648 |
Length | 120 |
Max. P | 0.945947 |
Location | 8,537,528 – 8,537,648 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.50 |
Mean single sequence MFE | -45.86 |
Consensus MFE | -44.84 |
Energy contribution | -45.24 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.53 |
Structure conservation index | 0.98 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.945947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8537528 120 + 22224390 CAAUCUCCUCGGAAUCGGAUCCAUCGGAACCCUCGUCGGAGUGUCCGGAUAGGGCGGCCAUUCCGCCCAGUUCCAUGCCGUGCGACGGCGCCUUAUAGAGCUUUAGUUCUGUAUAGGUCU ..........((((((((((((..(((.....)))..)))...))))....((((((.....)))))).)))))..((((.....))))((((((((((((....)))))))).)))).. ( -47.00) >DroSec_CAF1 1757 120 + 1 CGAUCUCCUCGGAAUCGGAUCCAUCGGAACCCUCGUCGGAGUGUCCGGAUAGGGCGGCCAUUCCGCCCAGUUCCAUGCCGUGCGACGGCGCCUUAUAGAGCUUUAGUUCUGUAUAGGUCU ((((.((....))))))........(((((.....((((.....))))...((((((.....)))))).)))))..((((.....))))((((((((((((....)))))))).)))).. ( -47.30) >DroSim_CAF1 1774 120 + 1 CGAUCUCCUCGGAAUCGGAUCCAUCGGAACCCUCGUCGGAGUGUCCGGAUAGGGCGGCCAUUCCGCCCAGUUCCAUGCCGUGCGACGGCGCCUUAUAGAGCUUUAGUUCUGUAUAGGUCU ((((.((....))))))........(((((.....((((.....))))...((((((.....)))))).)))))..((((.....))))((((((((((((....)))))))).)))).. ( -47.30) >DroEre_CAF1 1834 120 + 1 CGAUCUCCUCGGAAUCGGAUCCAUCGGAACCCUCGUCGGAGUGUCCGGAUAGGGCGGCCAUUCCGCCCAGUUCCAUGCCGUGCGACGGCGCCUUAUAGAGCUUUAAUUCUGUAUAGGUCU .(((((...((((((..((....(((((((.....((((.....))))...((((((.....)))))).)))))..((((.....))))........))..))..))))))...))))). ( -44.00) >DroYak_CAF1 1825 120 + 1 CGAUCUCCUCGGAAUCGGAUCCAUCGGAGCCCUCGUCGGAGUGUCCGGAUAGGGCGGCCAUUCCGCCCAGUUCCAUGCCGUGCGUCGGCGCCUUAUAGAGCUUUAAUUCUGUAUAGGUCU .(((((...((((((..((((....((.(((..((((((.(((...((((.((((((.....)))))).))))))).))).)))..))).)).....))..))..))))))...))))). ( -43.70) >consensus CGAUCUCCUCGGAAUCGGAUCCAUCGGAACCCUCGUCGGAGUGUCCGGAUAGGGCGGCCAUUCCGCCCAGUUCCAUGCCGUGCGACGGCGCCUUAUAGAGCUUUAGUUCUGUAUAGGUCU ..........((((((((((((..(((.....)))..)))...))))....((((((.....)))))).)))))..((((.....))))((((((((((((....)))))))).)))).. (-44.84 = -45.24 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:09 2006