Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,524,680 – 8,524,800 |
Length | 120 |
Max. P | 0.843515 |
Location | 8,524,680 – 8,524,800 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.00 |
Mean single sequence MFE | -47.02 |
Consensus MFE | -40.65 |
Energy contribution | -41.57 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.13 |
Mean z-score | -1.87 |
Structure conservation index | 0.86 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843515 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8524680 120 - 22224390 AAUCCUCGCGGGAAUCGCAGAAAUCUGAUUGCGAUGACAGCCGGUGCACAGGUAUUUGCCCAGGUAAGUGCAGUAGCGAAAGUGCUGCUGCAGGUGCUUGGCCACCCGCAUUCCACAGCC .......(((((....(((((.(((((..((((.((.....)).))))))))).)))))(((((((..((((((((((....))))))))))..)))))))...)))))........... ( -50.80) >DroSec_CAF1 66062 120 - 1 AAUUCUCGCGGGAAUCGCAGAAAUCUGGUUGCGAUGACAGCCGGUGCACAGGUAUUUUCCCAGGUAAGUGCAGUAGCGAAAGUGUUGCUGCAGGUGCUUGGCCACCCGCAUUCCACAGCC .......(((((....(((.....(((((((......))))))))))............(((((((..((((((((((....))))))))))..)))))))...)))))........... ( -46.00) >DroSim_CAF1 69150 120 - 1 AAUUCUCGCGGGAAUCGCAGAAAUCUGGUUGCGAUGACAGCCGGUGCACAGGUAUUUGCCCAGGUAAGUGCAGUAGCGAAAGUGUUGCUGCAGGUGCUUGGCCACCCGCAUUCCACAGCC .......(((((.(((((((........)))))))....(((((.((((..((((((((....)))))))).(((((((.....)))))))..)))))))))..)))))........... ( -48.50) >DroEre_CAF1 72434 120 - 1 GAUCCUGGCGGGAACCGCGGAAAUCUGAUUGCGAUGACAGCCGGUGCACAGGUAUUUGCCCAGGUAGGUGCAGUAGCGAAAAUGCUGCUGUAGGUGCUUGGCCACCCGCAUUCCACAGCC ......(((.((((..((((..(((((..((((.((.....)).)))))))))...((.(((((((..(((((((((......)))))))))..))))))).)).)))).))))...))) ( -47.50) >DroYak_CAF1 74710 120 - 1 GAUCCUGGCGGGAAUCGCAGAAAUCUGGUUGCGAUGACAGCCGGUGCACAGGUAUUUGCCCAGAUAGGUGCAGUAGCGAAAGUGCUGCUGCAGGUGCUUGGCCACCCGCAUGCCACAGCC .....((((((..(((((((........)))))))..).((.((((..(((((((((((((.....)).((((((.(....))))))).)))))))))))..)))).)).)))))..... ( -50.80) >DroAna_CAF1 108092 120 - 1 AAUCUUAGCGGGAAUGGCCGAUAUUUGGUUCCGGUGGCAGCCGGUGCAGAGAUAUUUUCCCAGAUAGUUGCAAUAGCGAUAGUGCUGCUGCAGAUGCUUUGCCACACGCAUGCCGCAGCC ......((((((((.....(((((((.((.(((((....))))).))..)))))))))))).....(((((....)))))...)))(((((.(((((..........)))).).))))). ( -38.50) >consensus AAUCCUCGCGGGAAUCGCAGAAAUCUGGUUGCGAUGACAGCCGGUGCACAGGUAUUUGCCCAGGUAAGUGCAGUAGCGAAAGUGCUGCUGCAGGUGCUUGGCCACCCGCAUUCCACAGCC .......(((((....(((((.(((((..((((.((.....)).))))))))).)))))(((((((..((((((((((....))))))))))..)))))))...)))))........... (-40.65 = -41.57 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:03 2006